BLASTX nr result

ID: Coptis24_contig00034313 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034313
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267686.1| PREDICTED: uncharacterized protein LOC100241...    62   5e-08
emb|CAN66218.1| hypothetical protein VITISV_024777 [Vitis vinifera]    62   5e-08
ref|XP_002313189.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07
ref|XP_003535681.1| PREDICTED: uncharacterized protein LOC100798...    57   1e-06
ref|XP_002510079.1| conserved hypothetical protein [Ricinus comm...    55   6e-06

>ref|XP_002267686.1| PREDICTED: uncharacterized protein LOC100241214 [Vitis vinifera]
           gi|296083030|emb|CBI22434.3| unnamed protein product
           [Vitis vinifera]
          Length = 195

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = -2

Query: 230 WTMYLDHS-VSPHPSQRNDGFVDEDSFYNEEYKKSQGKEEDEEDLSMVSDASSGPPH 63
           WT+YL+HS +S  P  R  GFVD +     +  K + +EE+EEDLSMVSDASSGPPH
Sbjct: 16  WTLYLEHSFLSADPLHRGSGFVDGEV----KRGKDEAEEEEEEDLSMVSDASSGPPH 68


>emb|CAN66218.1| hypothetical protein VITISV_024777 [Vitis vinifera]
          Length = 211

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = -2

Query: 230 WTMYLDHS-VSPHPSQRNDGFVDEDSFYNEEYKKSQGKEEDEEDLSMVSDASSGPPH 63
           WT+YL+HS +S  P  R  GFVD +     +  K + +EE+EEDLSMVSDASSGPPH
Sbjct: 16  WTLYLEHSFLSADPLHRGSGFVDGEV----KRGKDEAEEEEEEDLSMVSDASSGPPH 68


>ref|XP_002313189.1| predicted protein [Populus trichocarpa] gi|222849597|gb|EEE87144.1|
           predicted protein [Populus trichocarpa]
          Length = 185

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 15/71 (21%)
 Frame = -2

Query: 230 WTMYLDHSVSPHPSQRNDG----FVDEDS--FYN---------EEYKKSQGKEEDEEDLS 96
           WT+YL+ S  PHP+ ++ G    FVD  S  F           EE  + +G+ E+EEDLS
Sbjct: 17  WTLYLEQSFLPHPNPKHRGNSTDFVDAKSTGFCRKGKSTKEDCEEEDEGEGEGEEEEDLS 76

Query: 95  MVSDASSGPPH 63
           MVSDASSGPPH
Sbjct: 77  MVSDASSGPPH 87


>ref|XP_003535681.1| PREDICTED: uncharacterized protein LOC100798463 [Glycine max]
          Length = 195

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 230 WTMYLDHSVSPHPSQRNDGFVDEDSFYNEEYKKSQGKEEDEEDLSMVSDASSGPPHC--- 60
           WT+YL+ S     +   +G       Y EE+K  + K+E+EEDLSMVSDASSGPPH    
Sbjct: 17  WTLYLEQSFLNQKAGGTEGS------YEEEHKDKRFKDEEEEDLSMVSDASSGPPHFPDY 70

Query: 59  -XXXXXXXXXHGCFSSAS 9
                     +GCF SAS
Sbjct: 71  DEANYFNEEVNGCFYSAS 88


>ref|XP_002510079.1| conserved hypothetical protein [Ricinus communis]
           gi|223550780|gb|EEF52266.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 176

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
 Frame = -2

Query: 230 WTMYLDHS-VSPHPSQRNDGFVDEDSFYNEEYKKSQGKEED--EEDLSMVSDASSGPPH 63
           WT+YLD S +S +  Q   GFVD       EY +++  ++D  EEDLSMVSDASSGPPH
Sbjct: 17  WTLYLDQSSLSKNQYQNFGGFVD-----GNEYARAENDDDDYEEEDLSMVSDASSGPPH 70


Top