BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034242
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002836134.1| hypothetical chloroplast RF2 [Megaleranthis ...   117   1e-27
ref|YP_001004228.1| hypothetical chloroplast RF2 [Ranunculus mac...   116   3e-27
ref|YP_740694.1| hypothetical chloroplast RF2 [Nandina domestica...   114   2e-26
gb|AEX99130.1| hypothetical chloroplast RF2 (chloroplast) [Magno...   114   2e-26
ref|YP_007474579.1| hypothetical chloroplast RF2 (chloroplast) [...   114   2e-26

>ref|YP_002836134.1| hypothetical chloroplast RF2 [Megaleranthis saniculifolia]
           gi|229577815|ref|YP_002836151.1| hypothetical
           chloroplast RF2 [Megaleranthis saniculifolia]
           gi|226933926|gb|ACO92059.1| hypothetical chloroplast RF2
           [Megaleranthis saniculifolia]
           gi|226933943|gb|ACO92076.1| hypothetical chloroplast RF2
           [Megaleranthis saniculifolia]
          Length = 2288

 Score =  117 bits (294), Expect(2) = 1e-27
 Identities = 58/59 (98%), Positives = 58/59 (98%)
 Frame = +1

Query: 121 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 297
           LHLGSNPTEGSTRDQK LKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD
Sbjct: 507 LHLGSNPTEGSTRDQKWLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 565



 Score = 30.0 bits (66), Expect(2) = 1e-27
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 300 GCDMVPKDEPD 332
           GCDMVPKDEPD
Sbjct: 567 GCDMVPKDEPD 577


>ref|YP_001004228.1| hypothetical chloroplast RF2 [Ranunculus macranthus]
           gi|122894049|ref|YP_001004245.1| hypothetical
           chloroplast RF2 [Ranunculus macranthus]
           gi|205413370|sp|A1XGT0.1|YCF2_RANMC RecName:
           Full=Protein ycf2 gi|85540846|gb|ABC70798.1|
           hypothetical chloroplast RF2 [Ranunculus macranthus]
           gi|85540863|gb|ABC70815.1| hypothetical chloroplast RF2
           [Ranunculus macranthus]
          Length = 2294

 Score =  116 bits (291), Expect(2) = 3e-27
 Identities = 57/59 (96%), Positives = 58/59 (98%)
 Frame = +1

Query: 121 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 297
           LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIF+IITYLQNTVSIHPI SD
Sbjct: 502 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFRIITYLQNTVSIHPILSD 560



 Score = 30.0 bits (66), Expect(2) = 3e-27
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 300 GCDMVPKDEPD 332
           GCDMVPKDEPD
Sbjct: 562 GCDMVPKDEPD 572


>ref|YP_740694.1| hypothetical chloroplast RF2 [Nandina domestica]
           gi|114330032|ref|YP_740713.1| hypothetical chloroplast
           RF2 [Nandina domestica]
           gi|122165906|sp|Q09FP8.1|YCF2_NANDO RecName:
           Full=Protein ycf2 gi|114054515|gb|ABI49908.1|
           hypothetical chloroplast RF2 [Nandina domestica]
           gi|114054534|gb|ABI49927.1| hypothetical chloroplast RF2
           [Nandina domestica]
          Length = 2299

 Score =  114 bits (285), Expect(2) = 2e-26
 Identities = 57/59 (96%), Positives = 57/59 (96%)
 Frame = +1

Query: 121 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 297
           LHLGSNPTE STRDQKLLKKQQD SFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD
Sbjct: 510 LHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 568



 Score = 30.0 bits (66), Expect(2) = 2e-26
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 300 GCDMVPKDEPD 332
           GCDMVPKDEPD
Sbjct: 570 GCDMVPKDEPD 580


>gb|AEX99130.1| hypothetical chloroplast RF2 (chloroplast) [Magnolia grandiflora]
          Length = 2298

 Score =  114 bits (285), Expect(2) = 2e-26
 Identities = 57/59 (96%), Positives = 57/59 (96%)
 Frame = +1

Query: 121 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 297
           LHLGSNPTE STRDQKLLKKQQD SFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD
Sbjct: 507 LHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 565



 Score = 30.0 bits (66), Expect(2) = 2e-26
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 300 GCDMVPKDEPD 332
           GCDMVPKDEPD
Sbjct: 567 GCDMVPKDEPD 577


>ref|YP_007474579.1| hypothetical chloroplast RF2 (chloroplast) [Magnolia grandiflora]
           gi|452848915|ref|YP_007474596.1| photosystem I assembly
           protein Ycf2 (chloroplast) [Magnolia grandiflora]
           gi|372862885|gb|AEX98961.1| hypothetical chloroplast RF2
           (chloroplast) [Magnolia grandiflora]
           gi|372862902|gb|AEX98978.1| photosystem I assembly
           protein Ycf2 (chloroplast) [Magnolia grandiflora]
          Length = 2298

 Score =  114 bits (285), Expect(2) = 2e-26
 Identities = 57/59 (96%), Positives = 57/59 (96%)
 Frame = +1

Query: 121 LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 297
           LHLGSNPTE STRDQKLLKKQQD SFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD
Sbjct: 507 LHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHPISSD 565



 Score = 30.0 bits (66), Expect(2) = 2e-26
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 300 GCDMVPKDEPD 332
           GCDMVPKDEPD
Sbjct: 567 GCDMVPKDEPD 577