BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034211
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...   259   4e-67
ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...   255   4e-66
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...   252   5e-65
ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   144   1e-32
ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat...   144   1e-32

>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score =  259 bits (661), Expect = 4e-67
 Identities = 120/210 (57%), Positives = 161/210 (76%)
 Frame = +1

Query: 4   ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183
           AR VF+ M  +DL SWNSMISGYVSNG  DLA+E +N MR+DG EPD+V+WNT++DAYC+
Sbjct: 150 ARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQ 209

Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363
           MG+ +EA  +   I++PNIISWTTL S YS++G+H ++L++F++M+    V PD D L +
Sbjct: 210 MGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCS 269

Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDK 543
           +LVSCR +GA  +G+E+HGYG K +T    Y+SAGA L+TMY + GR+  A NVFELMDK
Sbjct: 270 VLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDK 329

Query: 544 SDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
           SD+VTWNAMIL FV L + + A+ CF +MQ
Sbjct: 330 SDIVTWNAMILGFVELDLGKQAIECFREMQ 359



 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 38/236 (16%)
 Frame = +1

Query: 37  DLLSWNSMISGYVSNGYLDLAIE-FVNAMRMDGVEPDL---------------------- 147
           +++SW ++IS Y   G  D+++  F + +  + V PDL                      
Sbjct: 227 NIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEI 286

Query: 148 ------VSWNTV---------IDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVG 282
                 +  NTV         +  Y + G+ ++A  +F  + + +I++W  +  G+  + 
Sbjct: 287 HGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELD 346

Query: 283 KHGIALQIFKNMMREGFVIPDADALSNILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS 462
               A++ F+ M R   +  D   +S IL  C L      G  +H Y  K+ TL  +   
Sbjct: 347 LGKQAIECFREMQRMD-IKNDQTTISTILPVCDLQ----YGNPIHAYVRKSITLSSVVTV 401

Query: 463 AGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630
             AV + MY + G V  A  +F  M   DVV+WN MI  F   G  ++AL    +M
Sbjct: 402 WNAV-IHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEM 456



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
 Frame = +1

Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342
           +I  Y        A R+F  + +PN+ +WT +   Y R G +   +Q +   M+   V+P
Sbjct: 36  LIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNY-GFMKYSDVLP 94

Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIKT--QTLLELYNSAGAVLVTMYGEFGRVHCA 516
           D      +L +C  L     G  +H   I    ++ L++ NS    L+ MY + G    A
Sbjct: 95  DNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNS----LIDMYVKCGNARSA 150

Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
             VFE M++ D+ +WN+MI  +V  G+   A+   + M+
Sbjct: 151 RLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMR 189



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
 Frame = +1

Query: 4   ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183
           A  +F  M  KD++SWN+MI G+  +G+   A++ +  M + G+ P+  ++ +V+ A   
Sbjct: 418 AYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSH 477

Query: 184 MGKCEEASRIFGYIKE-----PNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDA 348
            G  +E  R+F  + E     P +  ++ +    +R G+   A+     M  E    PD 
Sbjct: 478 SGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLE----PDK 533

Query: 349 DALSNILVSCR 381
                +L +CR
Sbjct: 534 SIWGALLAACR 544


>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  255 bits (652), Expect = 4e-66
 Identities = 127/209 (60%), Positives = 156/209 (74%)
 Frame = +1

Query: 7   RRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRM 186
           RRVFD M  +D+LSWNSMISGYV NG+L+ ++E + +MR+ G EPD+V+WNTV+DAYCRM
Sbjct: 179 RRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRM 238

Query: 187 GKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNI 366
           G C+EA  IF  IKEPNIIS TTL SGYSR+G H  +L IF+ MM      PD D+LS++
Sbjct: 239 GLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSV 298

Query: 367 LVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKS 546
           LVSCR LGA + G+E+HGYGI++      Y SAGA L+TMY +  R+  A NVFELMD+ 
Sbjct: 299 LVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRF 358

Query: 547 DVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
           DVVTWNAMIL FV L M   AL CFS+MQ
Sbjct: 359 DVVTWNAMILGFVDLEMGHLALECFSKMQ 387



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
 Frame = +1

Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342
           ++  Y +  + ++A  +F  +   ++++W  +  G+  +    +AL+ F  M R G ++ 
Sbjct: 335 LLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSG-IMN 393

Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIKTQ--TLLELYNSAGAVLVTMYGEFGRVHCA 516
           +   +S +L +C L     +G++VH Y  K    +++ ++N+    L+ MY + G +  A
Sbjct: 394 NQITISTVLPACDLK----SGKQVHAYITKNSFSSVIPVWNA----LIHMYSKCGCIGTA 445

Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630
            ++F  M   D+V+WN MI  F   G+ + AL     M
Sbjct: 446 YSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDM 483



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
 Frame = +1

Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342
           ++  Y   G    A  +F  + +PN+ +WT +   YSR G     ++ +  M  +G V+P
Sbjct: 64  LVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKG-VLP 122

Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGI--KTQTLLELYNSAGAVLVTMYGEFGRVHCA 516
           D      +  +C  L     G +VH   +    +  L++ NS    L+ MY + G V   
Sbjct: 123 DKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNS----LIDMYSKSGDVGSG 178

Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
             VF+ M + DV++WN+MI  +V  G +  ++   + M+
Sbjct: 179 RRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMR 217


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  252 bits (643), Expect = 5e-65
 Identities = 122/212 (57%), Positives = 155/212 (73%), Gaps = 2/212 (0%)
 Frame = +1

Query: 4   ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGV--EPDLVSWNTVIDAY 177
           AR+VFD M  +D+ SWNSM+SGYV NG    A+E +  M+ DG   EPD+V+WNTV+DAY
Sbjct: 157 ARQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMKKDGCGCEPDVVTWNTVMDAY 216

Query: 178 CRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADAL 357
           CRMG+C EASR+FG I++PN+ISWT L SGY+ VG+H ++L IF+ M+  G V PD DAL
Sbjct: 217 CRMGQCCEASRVFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDAL 276

Query: 358 SNILVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELM 537
           S +LVSCR LGA  +G+E+HGYG+K       Y SAGA L+ +Y  +GR+ CA NVF  M
Sbjct: 277 SGVLVSCRHLGALASGKEIHGYGLKIMCGDVFYRSAGAALLMLYAGWGRLDCADNVFWRM 336

Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
           DKSDVVTWNAMI   V +G+V  AL CF +MQ
Sbjct: 337 DKSDVVTWNAMIFGLVDVGLVDLALDCFREMQ 368



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
 Frame = +1

Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342
           +I  Y        A  +   I  PN+ ++T++ S +SR G     +Q +  + R G V+P
Sbjct: 43  LIQIYADSNDLRSAVTLLHQISHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNG-VVP 101

Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIK--TQTLLELYNSAGAVLVTMYGEFGRVHCA 516
           D      +L +C  L    +GR VH   +    ++ L++ NS    ++ MY + G V  A
Sbjct: 102 DGYVFPKVLKACAQLSRFGSGRGVHKDVVVFGEESNLQVRNS----VLDMYSKCGDVGSA 157

Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633
             VF+ M + DV +WN+M+  +V  G+   A+     M+
Sbjct: 158 RQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMK 196


>ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  144 bits (364), Expect = 1e-32
 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
 Frame = +1

Query: 4   ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183
           AR +FD +  K+L+SWN MISGY  NG  +  I  ++ MR+ G  PD V+ +T+I AYC+
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268

Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363
            G+ +EA R+F   KE +I+ WT +  GY++ G+   AL +F  M+ E  + PD+  LS+
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE-HIEPDSYTLSS 327

Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS--AGAVLVTMYGEFGRVHCASNVFELM 537
           ++ SC  L +  +G+ VHG  I    L  L N+    + L+ MY + G +  A +VF LM
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSI----LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630
              +VV+WNAMI+     G  + AL  F  M
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENM 414



 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 52/201 (25%), Positives = 90/201 (44%)
 Frame = +1

Query: 31  PKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRMGKCEEASR 210
           P D    N ++  Y   G L  A    + M    ++ D  SWN ++ AY + G  +    
Sbjct: 55  PTDSFLHNQLLHLYAKFGKLRDAQNLFDKM----LKRDXFSWNALLSAYAKSGSIQNLKA 110

Query: 211 IFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNILVSCRLLG 390
            F  +   + +S+ T  +G+S       +L++FK M REGF   +   +S +  S +LL 
Sbjct: 111 TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLD 170

Query: 391 AHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAM 570
               G+++HG  I    L  ++      L  MY + G +  A  +F+ + K ++V+WN M
Sbjct: 171 LRY-GKQIHGSIIVRNFLGNVF--IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 571 ILAFVHLGMVRSALTCFSQMQ 633
           I  +   G     +    QM+
Sbjct: 228 ISGYAKNGQPEKCIGLLHQMR 248


>ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  144 bits (364), Expect = 1e-32
 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
 Frame = +1

Query: 4   ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183
           AR +FD +  K+L+SWN MISGY  NG  +  I  ++ MR+ G  PD V+ +T+I AYC+
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268

Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363
            G+ +EA R+F   KE +I+ WT +  GY++ G+   AL +F  M+ E  + PD+  LS+
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE-HIEPDSYTLSS 327

Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS--AGAVLVTMYGEFGRVHCASNVFELM 537
           ++ SC  L +  +G+ VHG  I    L  L N+    + L+ MY + G +  A +VF LM
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSI----LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630
              +VV+WNAMI+     G  + AL  F  M
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENM 414



 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 52/201 (25%), Positives = 90/201 (44%)
 Frame = +1

Query: 31  PKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRMGKCEEASR 210
           P D    N ++  Y   G L  A    + M    ++ D+ SWN ++ AY + G  +    
Sbjct: 55  PTDSFLHNQLLHLYAKFGKLRDAQNLFDKM----LKRDIFSWNALLSAYAKSGSIQNLKA 110

Query: 211 IFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNILVSCRLLG 390
            F  +   + +S+ T  +G+S       +L++FK M REGF  P    + +IL +   L 
Sbjct: 111 TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE-PTEYTIVSILNASAQLS 169

Query: 391 AHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAM 570
               G+++HG  I    L  ++      L  MY + G +  A  +F+ + K ++V+WN M
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVF--IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 571 ILAFVHLGMVRSALTCFSQMQ 633
           I  +   G     +    QM+
Sbjct: 228 ISGYAKNGQPEKCIGLLHQMR 248