BLASTX nr result
ID: Coptis24_contig00034211
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00034211 (638 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002523554.1| pentatricopeptide repeat-containing protein,... 259 4e-67 ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi... 255 4e-66 ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi... 252 5e-65 ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 144 1e-32 ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat... 144 1e-32 >ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 611 Score = 259 bits (661), Expect = 4e-67 Identities = 120/210 (57%), Positives = 161/210 (76%) Frame = +1 Query: 4 ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183 AR VF+ M +DL SWNSMISGYVSNG DLA+E +N MR+DG EPD+V+WNT++DAYC+ Sbjct: 150 ARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQ 209 Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363 MG+ +EA + I++PNIISWTTL S YS++G+H ++L++F++M+ V PD D L + Sbjct: 210 MGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCS 269 Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDK 543 +LVSCR +GA +G+E+HGYG K +T Y+SAGA L+TMY + GR+ A NVFELMDK Sbjct: 270 VLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDK 329 Query: 544 SDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 SD+VTWNAMIL FV L + + A+ CF +MQ Sbjct: 330 SDIVTWNAMILGFVELDLGKQAIECFREMQ 359 Score = 66.2 bits (160), Expect = 5e-09 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 38/236 (16%) Frame = +1 Query: 37 DLLSWNSMISGYVSNGYLDLAIE-FVNAMRMDGVEPDL---------------------- 147 +++SW ++IS Y G D+++ F + + + V PDL Sbjct: 227 NIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEI 286 Query: 148 ------VSWNTV---------IDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVG 282 + NTV + Y + G+ ++A +F + + +I++W + G+ + Sbjct: 287 HGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELD 346 Query: 283 KHGIALQIFKNMMREGFVIPDADALSNILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS 462 A++ F+ M R + D +S IL C L G +H Y K+ TL + Sbjct: 347 LGKQAIECFREMQRMD-IKNDQTTISTILPVCDLQ----YGNPIHAYVRKSITLSSVVTV 401 Query: 463 AGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630 AV + MY + G V A +F M DVV+WN MI F G ++AL +M Sbjct: 402 WNAV-IHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEM 456 Score = 60.5 bits (145), Expect = 3e-07 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Frame = +1 Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342 +I Y A R+F + +PN+ +WT + Y R G + +Q + M+ V+P Sbjct: 36 LIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNY-GFMKYSDVLP 94 Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIKT--QTLLELYNSAGAVLVTMYGEFGRVHCA 516 D +L +C L G +H I ++ L++ NS L+ MY + G A Sbjct: 95 DNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNS----LIDMYVKCGNARSA 150 Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 VFE M++ D+ +WN+MI +V G+ A+ + M+ Sbjct: 151 RLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMR 189 Score = 56.2 bits (134), Expect = 5e-06 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Frame = +1 Query: 4 ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183 A +F M KD++SWN+MI G+ +G+ A++ + M + G+ P+ ++ +V+ A Sbjct: 418 AYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSH 477 Query: 184 MGKCEEASRIFGYIKE-----PNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDA 348 G +E R+F + E P + ++ + +R G+ A+ M E PD Sbjct: 478 SGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLE----PDK 533 Query: 349 DALSNILVSCR 381 +L +CR Sbjct: 534 SIWGALLAACR 544 >ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Vitis vinifera] Length = 634 Score = 255 bits (652), Expect = 4e-66 Identities = 127/209 (60%), Positives = 156/209 (74%) Frame = +1 Query: 7 RRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRM 186 RRVFD M +D+LSWNSMISGYV NG+L+ ++E + +MR+ G EPD+V+WNTV+DAYCRM Sbjct: 179 RRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRM 238 Query: 187 GKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNI 366 G C+EA IF IKEPNIIS TTL SGYSR+G H +L IF+ MM PD D+LS++ Sbjct: 239 GLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSV 298 Query: 367 LVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKS 546 LVSCR LGA + G+E+HGYGI++ Y SAGA L+TMY + R+ A NVFELMD+ Sbjct: 299 LVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRF 358 Query: 547 DVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 DVVTWNAMIL FV L M AL CFS+MQ Sbjct: 359 DVVTWNAMILGFVDLEMGHLALECFSKMQ 387 Score = 61.6 bits (148), Expect = 1e-07 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Frame = +1 Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342 ++ Y + + ++A +F + ++++W + G+ + +AL+ F M R G ++ Sbjct: 335 LLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSG-IMN 393 Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIKTQ--TLLELYNSAGAVLVTMYGEFGRVHCA 516 + +S +L +C L +G++VH Y K +++ ++N+ L+ MY + G + A Sbjct: 394 NQITISTVLPACDLK----SGKQVHAYITKNSFSSVIPVWNA----LIHMYSKCGCIGTA 445 Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630 ++F M D+V+WN MI F G+ + AL M Sbjct: 446 YSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDM 483 Score = 61.2 bits (147), Expect = 2e-07 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Frame = +1 Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342 ++ Y G A +F + +PN+ +WT + YSR G ++ + M +G V+P Sbjct: 64 LVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKG-VLP 122 Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGI--KTQTLLELYNSAGAVLVTMYGEFGRVHCA 516 D + +C L G +VH + + L++ NS L+ MY + G V Sbjct: 123 DKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNS----LIDMYSKSGDVGSG 178 Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 VF+ M + DV++WN+MI +V G + ++ + M+ Sbjct: 179 RRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMR 217 >ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Glycine max] Length = 619 Score = 252 bits (643), Expect = 5e-65 Identities = 122/212 (57%), Positives = 155/212 (73%), Gaps = 2/212 (0%) Frame = +1 Query: 4 ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGV--EPDLVSWNTVIDAY 177 AR+VFD M +D+ SWNSM+SGYV NG A+E + M+ DG EPD+V+WNTV+DAY Sbjct: 157 ARQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMKKDGCGCEPDVVTWNTVMDAY 216 Query: 178 CRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADAL 357 CRMG+C EASR+FG I++PN+ISWT L SGY+ VG+H ++L IF+ M+ G V PD DAL Sbjct: 217 CRMGQCCEASRVFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDAL 276 Query: 358 SNILVSCRLLGAHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELM 537 S +LVSCR LGA +G+E+HGYG+K Y SAGA L+ +Y +GR+ CA NVF M Sbjct: 277 SGVLVSCRHLGALASGKEIHGYGLKIMCGDVFYRSAGAALLMLYAGWGRLDCADNVFWRM 336 Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 DKSDVVTWNAMI V +G+V AL CF +MQ Sbjct: 337 DKSDVVTWNAMIFGLVDVGLVDLALDCFREMQ 368 Score = 65.1 bits (157), Expect = 1e-08 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 2/159 (1%) Frame = +1 Query: 163 VIDAYCRMGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIP 342 +I Y A + I PN+ ++T++ S +SR G +Q + + R G V+P Sbjct: 43 LIQIYADSNDLRSAVTLLHQISHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNG-VVP 101 Query: 343 DADALSNILVSCRLLGAHLNGREVHGYGIK--TQTLLELYNSAGAVLVTMYGEFGRVHCA 516 D +L +C L +GR VH + ++ L++ NS ++ MY + G V A Sbjct: 102 DGYVFPKVLKACAQLSRFGSGRGVHKDVVVFGEESNLQVRNS----VLDMYSKCGDVGSA 157 Query: 517 SNVFELMDKSDVVTWNAMILAFVHLGMVRSALTCFSQMQ 633 VF+ M + DV +WN+M+ +V G+ A+ M+ Sbjct: 158 RQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMK 196 >ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] Length = 695 Score = 144 bits (364), Expect = 1e-32 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 2/211 (0%) Frame = +1 Query: 4 ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183 AR +FD + K+L+SWN MISGY NG + I ++ MR+ G PD V+ +T+I AYC+ Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268 Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363 G+ +EA R+F KE +I+ WT + GY++ G+ AL +F M+ E + PD+ LS+ Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE-HIEPDSYTLSS 327 Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS--AGAVLVTMYGEFGRVHCASNVFELM 537 ++ SC L + +G+ VHG I L L N+ + L+ MY + G + A +VF LM Sbjct: 328 VVSSCAKLASLHHGQAVHGKSI----LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383 Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630 +VV+WNAMI+ G + AL F M Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENM 414 Score = 73.2 bits (178), Expect = 4e-11 Identities = 52/201 (25%), Positives = 90/201 (44%) Frame = +1 Query: 31 PKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRMGKCEEASR 210 P D N ++ Y G L A + M ++ D SWN ++ AY + G + Sbjct: 55 PTDSFLHNQLLHLYAKFGKLRDAQNLFDKM----LKRDXFSWNALLSAYAKSGSIQNLKA 110 Query: 211 IFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNILVSCRLLG 390 F + + +S+ T +G+S +L++FK M REGF + +S + S +LL Sbjct: 111 TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLD 170 Query: 391 AHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAM 570 G+++HG I L ++ L MY + G + A +F+ + K ++V+WN M Sbjct: 171 LRY-GKQIHGSIIVRNFLGNVF--IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227 Query: 571 ILAFVHLGMVRSALTCFSQMQ 633 I + G + QM+ Sbjct: 228 ISGYAKNGQPEKCIGLLHQMR 248 >ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] Length = 695 Score = 144 bits (364), Expect = 1e-32 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 2/211 (0%) Frame = +1 Query: 4 ARRVFDGMGPKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCR 183 AR +FD + K+L+SWN MISGY NG + I ++ MR+ G PD V+ +T+I AYC+ Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268 Query: 184 MGKCEEASRIFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSN 363 G+ +EA R+F KE +I+ WT + GY++ G+ AL +F M+ E + PD+ LS+ Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE-HIEPDSYTLSS 327 Query: 364 ILVSCRLLGAHLNGREVHGYGIKTQTLLELYNS--AGAVLVTMYGEFGRVHCASNVFELM 537 ++ SC L + +G+ VHG I L L N+ + L+ MY + G + A +VF LM Sbjct: 328 VVSSCAKLASLHHGQAVHGKSI----LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383 Query: 538 DKSDVVTWNAMILAFVHLGMVRSALTCFSQM 630 +VV+WNAMI+ G + AL F M Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENM 414 Score = 72.4 bits (176), Expect = 7e-11 Identities = 52/201 (25%), Positives = 90/201 (44%) Frame = +1 Query: 31 PKDLLSWNSMISGYVSNGYLDLAIEFVNAMRMDGVEPDLVSWNTVIDAYCRMGKCEEASR 210 P D N ++ Y G L A + M ++ D+ SWN ++ AY + G + Sbjct: 55 PTDSFLHNQLLHLYAKFGKLRDAQNLFDKM----LKRDIFSWNALLSAYAKSGSIQNLKA 110 Query: 211 IFGYIKEPNIISWTTLTSGYSRVGKHGIALQIFKNMMREGFVIPDADALSNILVSCRLLG 390 F + + +S+ T +G+S +L++FK M REGF P + +IL + L Sbjct: 111 TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE-PTEYTIVSILNASAQLS 169 Query: 391 AHLNGREVHGYGIKTQTLLELYNSAGAVLVTMYGEFGRVHCASNVFELMDKSDVVTWNAM 570 G+++HG I L ++ L MY + G + A +F+ + K ++V+WN M Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVF--IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227 Query: 571 ILAFVHLGMVRSALTCFSQMQ 633 I + G + QM+ Sbjct: 228 ISGYAKNGQPEKCIGLLHQMR 248