BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034150
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38872.3| unnamed protein product [Vitis vinifera]              140   8e-32
ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
ref|XP_002320719.1| predicted protein [Populus trichocarpa] gi|2...   135   4e-30
emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]   134   6e-30
ref|XP_002511699.1| pentatricopeptide repeat-containing protein,...   134   8e-30

>emb|CBI38872.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 3/110 (2%)
 Frame = -2

Query: 326 AHSPQPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPL 147
           A S QPWNS  PTL LL   KTL  +NQIH+R+ITTG I N  LTT +I+NFSSS H+PL
Sbjct: 5   ATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPL 64

Query: 146 VDFARYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6
           V+FARY+F S+H    H+   +PFLWN IIKSFSHG DP++A V+F+LM+
Sbjct: 65  VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLML 114


>ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 3/110 (2%)
 Frame = -2

Query: 326 AHSPQPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPL 147
           A S QPWNS  PTL LL   KTL  +NQIH+R+ITTG I N  LTT +I+NFSSS H+PL
Sbjct: 5   ATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPL 64

Query: 146 VDFARYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6
           V+FARY+F S+H    H+   +PFLWN IIKSFSHG DP++A V+F+LM+
Sbjct: 65  VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLML 114


>ref|XP_002320719.1| predicted protein [Populus trichocarpa] gi|222861492|gb|EEE99034.1|
           predicted protein [Populus trichocarpa]
          Length = 643

 Score =  135 bits (339), Expect = 4e-30
 Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 7/110 (6%)
 Frame = -2

Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135
           QPWNS  PTL LL+ CK L  INQIHAR++TTG I+N+FLTT++I++FS+S H PL++FA
Sbjct: 10  QPWNSAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFA 69

Query: 134 RYIFFSQHS-------HKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6
           R+IFF  H+        +   DPFLWN IIK++SHG+DPK+A+ L SLM+
Sbjct: 70  RFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLML 119


>emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  134 bits (338), Expect = 6e-30
 Identities = 63/106 (59%), Positives = 79/106 (74%), Gaps = 3/106 (2%)
 Frame = -2

Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135
           +PWNS  PTL LL   KTL  +NQIH+R+ITTG I N  LTT +I+NFSSS H+PLV+FA
Sbjct: 65  KPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFA 124

Query: 134 RYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6
           RY+F S+H    H+   +PFLWN IIKSFSHG DP +A  +F+LM+
Sbjct: 125 RYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLML 170


>ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548879|gb|EEF50368.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 474

 Score =  134 bits (337), Expect = 8e-30
 Identities = 61/107 (57%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
 Frame = -2

Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135
           QPWNSP  TL L++ CKT   INQ+HAR+ITTG I+N+ LTT++I++ SSSP+  L +FA
Sbjct: 10  QPWNSPLSTLILVRKCKTASDINQVHARMITTGFIKNTSLTTKIILSLSSSPNVALHEFA 69

Query: 134 RYIFFSQHSH----KNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6
           RY FF++H++    +   DPFLWN +IK+ SHGNDPKQA+++FSLM+
Sbjct: 70  RYFFFTRHAYIIGAQEKEDPFLWNAVIKTHSHGNDPKQALIIFSLML 116