BLASTX nr result
ID: Coptis24_contig00034150
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00034150 (336 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI38872.3| unnamed protein product [Vitis vinifera] 140 8e-32 ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containi... 140 8e-32 ref|XP_002320719.1| predicted protein [Populus trichocarpa] gi|2... 135 4e-30 emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera] 134 6e-30 ref|XP_002511699.1| pentatricopeptide repeat-containing protein,... 134 8e-30 >emb|CBI38872.3| unnamed protein product [Vitis vinifera] Length = 379 Score = 140 bits (354), Expect = 8e-32 Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 3/110 (2%) Frame = -2 Query: 326 AHSPQPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPL 147 A S QPWNS PTL LL KTL +NQIH+R+ITTG I N LTT +I+NFSSS H+PL Sbjct: 5 ATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPL 64 Query: 146 VDFARYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6 V+FARY+F S+H H+ +PFLWN IIKSFSHG DP++A V+F+LM+ Sbjct: 65 VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLML 114 >ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like [Vitis vinifera] Length = 635 Score = 140 bits (354), Expect = 8e-32 Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 3/110 (2%) Frame = -2 Query: 326 AHSPQPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPL 147 A S QPWNS PTL LL KTL +NQIH+R+ITTG I N LTT +I+NFSSS H+PL Sbjct: 5 ATSNQPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPL 64 Query: 146 VDFARYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6 V+FARY+F S+H H+ +PFLWN IIKSFSHG DP++A V+F+LM+ Sbjct: 65 VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLML 114 >ref|XP_002320719.1| predicted protein [Populus trichocarpa] gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa] Length = 643 Score = 135 bits (339), Expect = 4e-30 Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 7/110 (6%) Frame = -2 Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135 QPWNS PTL LL+ CK L INQIHAR++TTG I+N+FLTT++I++FS+S H PL++FA Sbjct: 10 QPWNSAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFA 69 Query: 134 RYIFFSQHS-------HKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6 R+IFF H+ + DPFLWN IIK++SHG+DPK+A+ L SLM+ Sbjct: 70 RFIFFRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLML 119 >emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera] Length = 690 Score = 134 bits (338), Expect = 6e-30 Identities = 63/106 (59%), Positives = 79/106 (74%), Gaps = 3/106 (2%) Frame = -2 Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135 +PWNS PTL LL KTL +NQIH+R+ITTG I N LTT +I+NFSSS H+PLV+FA Sbjct: 65 KPWNSTHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFA 124 Query: 134 RYIFFSQH---SHKNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6 RY+F S+H H+ +PFLWN IIKSFSHG DP +A +F+LM+ Sbjct: 125 RYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLML 170 >ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 474 Score = 134 bits (337), Expect = 8e-30 Identities = 61/107 (57%), Positives = 84/107 (78%), Gaps = 4/107 (3%) Frame = -2 Query: 314 QPWNSPTPTLHLLQTCKTLQHINQIHARIITTGLIRNSFLTTELIINFSSSPHQPLVDFA 135 QPWNSP TL L++ CKT INQ+HAR+ITTG I+N+ LTT++I++ SSSP+ L +FA Sbjct: 10 QPWNSPLSTLILVRKCKTASDINQVHARMITTGFIKNTSLTTKIILSLSSSPNVALHEFA 69 Query: 134 RYIFFSQHSH----KNYTDPFLWNLIIKSFSHGNDPKQAIVLFSLMM 6 RY FF++H++ + DPFLWN +IK+ SHGNDPKQA+++FSLM+ Sbjct: 70 RYFFFTRHAYIIGAQEKEDPFLWNAVIKTHSHGNDPKQALIIFSLML 116