BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034143
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   237   8e-61
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              237   8e-61
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...   234   4e-60
ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t...   222   3e-56
ref|XP_002864963.1| pentatricopeptide repeat-containing protein ...   201   4e-50

>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like
            [Vitis vinifera]
          Length = 751

 Score =  237 bits (604), Expect = 8e-61
 Identities = 110/169 (65%), Positives = 139/169 (82%)
 Frame = -1

Query: 508  IMNRVVELEPGDEGAHILLTNIYASTGRWNEVTKMKTIIKEMKLKKAPAMSWIEVDKEVE 329
            +MNRV++L P D G H+LL+N+YASTG W++V +MK+ ++EM+LKK PAMSW++V++E+ 
Sbjct: 569  VMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIH 628

Query: 328  TFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEKEKERSLNYHSEKLAI 149
            TFMAGD SHP   +I E+LE L E++K LGYVPDT FVLQDL+E++K RSL YHSEKLA+
Sbjct: 629  TFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAV 688

Query: 148  AFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRF 2
            AF L  S  K T IRI KNLRVCGDCHTW+K+VSK VGR+IIARD KRF
Sbjct: 689  AFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRF 737


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  237 bits (604), Expect = 8e-61
 Identities = 110/169 (65%), Positives = 139/169 (82%)
 Frame = -1

Query: 508  IMNRVVELEPGDEGAHILLTNIYASTGRWNEVTKMKTIIKEMKLKKAPAMSWIEVDKEVE 329
            +MNRV++L P D G H+LL+N+YASTG W++V +MK+ ++EM+LKK PAMSW++V++E+ 
Sbjct: 538  VMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIH 597

Query: 328  TFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEKEKERSLNYHSEKLAI 149
            TFMAGD SHP   +I E+LE L E++K LGYVPDT FVLQDL+E++K RSL YHSEKLA+
Sbjct: 598  TFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAV 657

Query: 148  AFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRF 2
            AF L  S  K T IRI KNLRVCGDCHTW+K+VSK VGR+IIARD KRF
Sbjct: 658  AFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRF 706


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like
            [Glycine max]
          Length = 676

 Score =  234 bits (598), Expect = 4e-60
 Identities = 109/169 (64%), Positives = 141/169 (83%)
 Frame = -1

Query: 508  IMNRVVELEPGDEGAHILLTNIYASTGRWNEVTKMKTIIKEMKLKKAPAMSWIEVDKEVE 329
            +M++++EL PGD G HILLTN+YAS G+WN+V +MK+ I+++KLKK+PAMSW++VD+EV 
Sbjct: 494  VMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVH 553

Query: 328  TFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEKEKERSLNYHSEKLAI 149
            TFMAGDLSHPR+ EI E L  L +++K LGY P+T FVLQDL+E++K  SL YHSEKLAI
Sbjct: 554  TFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAI 613

Query: 148  AFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRF 2
            A+ L  +  +TT IRIFKNLRVCGDCH+WIK+VS   GR+IIARD+KRF
Sbjct: 614  AYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRF 662


>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 676

 Score =  222 bits (565), Expect = 3e-56
 Identities = 106/168 (63%), Positives = 131/168 (77%)
 Frame = -1

Query: 505 MNRVVELEPGDEGAHILLTNIYASTGRWNEVTKMKTIIKEMKLKKAPAMSWIEVDKEVET 326
           M ++++  P D G HILLTNIYAS G+W+ V +MK+  ++++LKK PAMSW+++D+EV T
Sbjct: 495 MKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHT 554

Query: 325 FMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEKEKERSLNYHSEKLAIA 146
           FMAGDLSHPRA EI E L  L E++  LGY PDT FVLQDL E++K  +L YHSEKLAIA
Sbjct: 555 FMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIA 614

Query: 145 FGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRF 2
           F L  +  K T IRIFKNLRVCGDCH+WIK+VS   GR+IIARDAKRF
Sbjct: 615 FALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRF 662


>ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297310798|gb|EFH41222.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 720

 Score =  201 bits (512), Expect = 4e-50
 Identities = 103/170 (60%), Positives = 126/170 (74%), Gaps = 1/170 (0%)
 Frame = -1

Query: 508  IMNRVVELEPGDEGAHILLTNIYASTGRWNEVTKMKTIIKEMKLKKAPAMSWIEVDKEVE 329
            I  +++E+ PGDEG  ILL+N+YASTG+W  V +MK+ +KEMKLKK PAMSW+E+DKE  
Sbjct: 539  ITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETH 598

Query: 328  TFMAGDL-SHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEKEKERSLNYHSEKLA 152
            TFMAGDL SHP + +I E LE L ++ K LGYV D   V QD+ E  KERSL+ HSEKLA
Sbjct: 599  TFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLA 658

Query: 151  IAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRF 2
            IAF +   RN    IRI KNLRVC DCH+WIK VS+ + REII RD+KRF
Sbjct: 659  IAFAVW--RNVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRF 706