BLASTX nr result

ID: Coptis24_contig00034136 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034136
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19594.3| unnamed protein product [Vitis vinifera]              127   1e-27
ref|XP_002282153.1| PREDICTED: probable transcription factor KAN...   127   1e-27
ref|XP_002510296.1| hypothetical protein RCOM_1592640 [Ricinus c...   116   2e-24
ref|XP_002301209.1| predicted protein [Populus trichocarpa] gi|2...   111   5e-23
ref|XP_002327097.1| predicted protein [Populus trichocarpa] gi|2...   110   9e-23

>emb|CBI19594.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score =  127 bits (318), Expect = 1e-27
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LSLGIERESLISPLLMPPQRNLHYLHHLHHPQMYGHEFKRNSRG-NGGKRSIRAPRMRWT 177
           LSLG+E  +L  P L  P RNLH+ HH H PQ+YG EFKRNSR  NG KRSIRAPRMRWT
Sbjct: 34  LSLGLEMAALNPPPLELP-RNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWT 92

Query: 178 STLHAHFVHAVELLGGHERATPKSVL 255
           +TLHAHFVHAV+LLGGHERATPKSVL
Sbjct: 93  TTLHAHFVHAVQLLGGHERATPKSVL 118


>ref|XP_002282153.1| PREDICTED: probable transcription factor KAN4-like [Vitis vinifera]
          Length = 338

 Score =  127 bits (318), Expect = 1e-27
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LSLGIERESLISPLLMPPQRNLHYLHHLHHPQMYGHEFKRNSRG-NGGKRSIRAPRMRWT 177
           LSLG+E  +L  P L  P RNLH+ HH H PQ+YG EFKRNSR  NG KRSIRAPRMRWT
Sbjct: 76  LSLGLEMAALNPPPLELP-RNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWT 134

Query: 178 STLHAHFVHAVELLGGHERATPKSVL 255
           +TLHAHFVHAV+LLGGHERATPKSVL
Sbjct: 135 TTLHAHFVHAVQLLGGHERATPKSVL 160


>ref|XP_002510296.1| hypothetical protein RCOM_1592640 [Ricinus communis]
           gi|223550997|gb|EEF52483.1| hypothetical protein
           RCOM_1592640 [Ricinus communis]
          Length = 347

 Score =  116 bits (291), Expect = 2e-24
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LSLGIERESLISPLLMPPQRNLHYLHHLHHPQMYGHEFKRNSRG-NGGKRSIRAPRMRWT 177
           LSLG E   + +P  +   RNL++ HH H PQ+YG EFKRN R  +G KRSIRAPRMRWT
Sbjct: 89  LSLGFEMADMTTPPALQLPRNLNHHHH-HQPQIYGREFKRNGRMISGVKRSIRAPRMRWT 147

Query: 178 STLHAHFVHAVELLGGHERATPKSVL 255
           +TLHAHFVHAV+LLGGHERATPKSVL
Sbjct: 148 TTLHAHFVHAVQLLGGHERATPKSVL 173


>ref|XP_002301209.1| predicted protein [Populus trichocarpa] gi|222842935|gb|EEE80482.1|
           predicted protein [Populus trichocarpa]
          Length = 193

 Score =  111 bits (278), Expect = 5e-23
 Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LSLGIERESLISPLLMPPQRNLHYLHHLHHPQMYGHEFKRNSRG-NGGKRSIRAPRMRWT 177
           LSLG +   L SP    P RNL++LHH H+PQ+YG +FKR++R  +G +RS RAPRMRWT
Sbjct: 77  LSLGFDMADLSSPSFQLP-RNLNHLHH-HNPQIYGGDFKRSARMISGVRRSKRAPRMRWT 134

Query: 178 STLHAHFVHAVELLGGHERATPKSVL 255
           +TLHAHFVHAV+LLGGHERATPKSVL
Sbjct: 135 TTLHAHFVHAVQLLGGHERATPKSVL 160


>ref|XP_002327097.1| predicted protein [Populus trichocarpa] gi|222835412|gb|EEE73847.1|
           predicted protein [Populus trichocarpa]
          Length = 293

 Score =  110 bits (276), Expect = 9e-23
 Identities = 59/86 (68%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LSLGIERESLISPLLMPPQRNLHYLHHLHHPQMYGHEFKRNSRG-NGGKRSIRAPRMRWT 177
           LSLG +   L S  L  P RNL+  HH H PQ+YG  FKR++R  NG KRS+RAPRMRWT
Sbjct: 74  LSLGFDMADLSSQTLQLP-RNLN--HHHHQPQIYGRNFKRSARMINGVKRSVRAPRMRWT 130

Query: 178 STLHAHFVHAVELLGGHERATPKSVL 255
           +TLHAHFVHAV LLGGHERATPKSVL
Sbjct: 131 TTLHAHFVHAVRLLGGHERATPKSVL 156


Top