BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034119
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]   107   1e-21
ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
ref|XP_003623067.1| Pentatricopeptide repeat-containing protein ...   100   2e-19

>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
           gi|296089757|emb|CBI39576.3| unnamed protein product
           [Vitis vinifera]
          Length = 586

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/89 (56%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           VE+GCVP+ FTYNMLIKGFCK G   EG++++E+M++ G LPNK+TY IL EGL E G  
Sbjct: 477 VEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLE 536

Query: 182 EEVMNALAVATSSGWISLDTDSWGVFVRK 268
            EV N L++A+S G   +D + WGVF+ K
Sbjct: 537 GEVTNVLSMASSRG--GVDAECWGVFLAK 563



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           ++RG VP   TY +L+ G+CK G+  + VK++++M E    PN  TY ++ E  C+  K 
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKS 362

Query: 182 EEVMNAL 202
            EV+N L
Sbjct: 363 GEVLNLL 369


>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/89 (56%), Positives = 66/89 (74%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           VE+GCVP+ FTYNMLIKGFCK G   EG++++E+M++ G LPNK+TY IL EGL E G  
Sbjct: 477 VEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLE 536

Query: 182 EEVMNALAVATSSGWISLDTDSWGVFVRK 268
            EV N L++A+S G   +D + WGVF+ K
Sbjct: 537 GEVTNVLSMASSRG--GVDAECWGVFLAK 563



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           ++RG VP   TY +L+ G+CK G+  + VK++++M E    PN  TY ++ E  C+  K 
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKS 362

Query: 182 EEVMNAL 202
            EV+N L
Sbjct: 363 GEVLNLL 369


>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
           gi|449492939|ref|XP_004159147.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/106 (47%), Positives = 75/106 (70%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           +E+GCVP+ FTYNMLIKGF K GK  E +K++E+M++KG L N+STY IL EGL + GK 
Sbjct: 428 LEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKR 487

Query: 182 EEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 319
           EE++N L++  SSG  ++D  +W +FV   ++N      +L+ I++
Sbjct: 488 EELLNILSMIISSG--AVDFKAWNLFVPHFVSNVNEQANILEKILI 531


>ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|222858420|gb|EEE95967.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score =  103 bits (256), Expect = 2e-20
 Identities = 51/106 (48%), Positives = 73/106 (68%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           VE+ C P+ FTYNMLIKGF KAG V EGV++LE+M++ G LPNKSTY +L EGL ESG  
Sbjct: 394 VEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESGME 453

Query: 182 EEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 319
            +V   +++A +S    +D DSW +F+ K++ N +     LD +++
Sbjct: 454 GDVDKVMSMAMASR--EVDADSWDLFLHKIVGNLDCGTGALDRLLM 497



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 21/66 (31%), Positives = 41/66 (62%)
 Frame = +2

Query: 5   ERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKGE 184
           ++G +P   TY +L+ G+CK G++S+ +K++++M   G  PN+ TY ++ +  C+  K  
Sbjct: 221 DKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSG 280

Query: 185 EVMNAL 202
           E  N +
Sbjct: 281 EARNLI 286


>ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498082|gb|AES79285.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  100 bits (248), Expect = 2e-19
 Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEG-LCESGK 178
           VE+G  P+ FTYNMLIKGFCK G   EG+++LE+M+E   LPNKSTY IL +G L   G 
Sbjct: 428 VEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILIDGILLLGGM 487

Query: 179 GEEVMNALAVATSSGWISLDTDSWGVFVRKVLANSENWRPVLDSIML 319
            +E+   +++A S+G   +D D W +FV+ V+ N       LD I+L
Sbjct: 488 KQEINKVVSLAMSTG---VDADLWNIFVKPVVGNDNGGEAELDRILL 531



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 21/67 (31%), Positives = 42/67 (62%)
 Frame = +2

Query: 2   VERGCVPSVFTYNMLIKGFCKAGKVSEGVKLLEDMMEKGYLPNKSTYFILAEGLCESGKG 181
           ++RG  P V +Y +L+ GFC+ GK+ + +++++ M + G  PN+ TY ++ +  C+  K 
Sbjct: 253 LDRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQAYCKEKKS 312

Query: 182 EEVMNAL 202
            E +N +
Sbjct: 313 GEAVNLI 319