BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034039
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp....   139   2e-31
ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat...   139   3e-31
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   137   9e-31
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   137   1e-30
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   137   1e-30

>ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319188|gb|EFH49610.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1281

 Score =  139 bits (351), Expect = 2e-31
 Identities = 65/103 (63%), Positives = 80/103 (77%)
 Frame = +3

Query: 3   RGWVDEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKA 182
           RGW+DEH+ TIL+VSF KWG+VDKAFEL+E +E  ++  N KT C LIHGF KESR+DKA
Sbjct: 243 RGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKA 302

Query: 183 LQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMK 311
            QLFEKM+ +  NPD+ LY VLI GLCK K+L  AL LY ++K
Sbjct: 303 FQLFEKMRRMGMNPDIALYDVLIGGLCKHKDLEMALSLYLEIK 345


>ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score =  139 bits (349), Expect = 3e-31
 Identities = 65/103 (63%), Positives = 84/103 (81%)
 Frame = +3

Query: 3   RGWVDEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKA 182
           RGWVDEHV TIL V+FSKWG+VD A EL+ +ME L M P+EKTL  L+HGFAK+ R+DKA
Sbjct: 240 RGWVDEHVLTILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAKQLRLDKA 299

Query: 183 LQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMK 311
           +++F+KM    F   LP+YSVLIEGLC+KKE+GKA++L+ +MK
Sbjct: 300 MEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEEMK 342


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score =  137 bits (345), Expect = 9e-31
 Identities = 65/103 (63%), Positives = 83/103 (80%)
 Frame = +3

Query: 3   RGWVDEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKA 182
           RGWVDE+VF+IL+++FSKWG+VDKA EL+E ME  N+  N+KT CSLI+GF KESRVDKA
Sbjct: 130 RGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKA 189

Query: 183 LQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMK 311
           L LF+KM+   F PD+ LY V+I GLC  K++ KAL LY++MK
Sbjct: 190 LHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMK 232


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
           gi|296085293|emb|CBI29025.3| unnamed protein product
           [Vitis vinifera]
          Length = 854

 Score =  137 bits (344), Expect = 1e-30
 Identities = 66/103 (64%), Positives = 81/103 (78%)
 Frame = +3

Query: 3   RGWVDEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKA 182
           RGWVD HV +IL+++FSK GEVDKAFEL+E+ME L +  NEKT C LIHGF ++SRVDKA
Sbjct: 263 RGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKA 322

Query: 183 LQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMK 311
           LQLF+KMQ   F PD+ +Y  LI GLC KKE+ KAL L ++MK
Sbjct: 323 LQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMK 365


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  137 bits (344), Expect = 1e-30
 Identities = 63/102 (61%), Positives = 78/102 (76%)
 Frame = +3

Query: 6   GWVDEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKAL 185
           GW+D +VF+IL++SFSKWG+VDK+FE +EKME  N   NEKT C+LIHGF K+SRVDK +
Sbjct: 40  GWLDAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGV 99

Query: 186 QLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMK 311
           QLF KMQ    +PD+ LY VLI G C  K+L KAL LY +MK
Sbjct: 100 QLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMK 141