BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034022
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72364.1| hypothetical protein VITISV_016465 [Vitis vinifera]    76   3e-12
gb|AAL58216.1|AC090882_19 putative transposon protein [Oryza sat...    60   2e-07
gb|ABF98547.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   2e-07
gb|AAP53710.2| transposon protein, putative, CACTA, En/Spm sub-c...    59   4e-07
ref|XP_003634239.1| PREDICTED: uncharacterized protein LOC100854...    55   6e-06

>emb|CAN72364.1| hypothetical protein VITISV_016465 [Vitis vinifera]
          Length = 593

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 43/113 (38%), Positives = 61/113 (53%)
 Frame = +2

Query: 2   YKPVLFKYDWVKLPNGVKLDNESKLLLVNLSNMLGSSQMNDEPFILTEHVSQVCYSKDPV 181
           YK VLFK DWVK         ES + +VNLSNM+    ++DEPFIL +H  QV YSKDP 
Sbjct: 311 YKLVLFKCDWVK---------ESNJRMVNLSNMIRFDLLDDEPFILAKHARQVLYSKDPK 361

Query: 182 NLDWLVVIEVPRRVYFDLDSTRVVSENIVVDELFARPIIPERMEDELIFNEEN 340
             +W +V++VP ++Y   +         V         +   +EDELI++  +
Sbjct: 362 VHNWHIVLDVPPKIYVKDEPWLSTEPPDVTISNIEFSSVTHFIEDELIYDNSS 414


>gb|AAL58216.1|AC090882_19 putative transposon protein [Oryza sativa Japonica Group]
          Length = 1451

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +2

Query: 11  VLFKYDWVKLPNG--VKLDNESKLLLVNLSNMLGSSQ-MNDEPFILTEHVSQVCYSKDPV 181
           VLFK DW+KL  G  VK D    + LVN +++  ++  + DEPFIL    +QV Y +DP+
Sbjct: 671 VLFKCDWIKLSRGKGVKKDKYG-VTLVNFNHLSNNTNSLADEPFILASQATQVYYVRDPI 729

Query: 182 NLDWLVVIEVPRRVYFDLDSTRVVSENIVVDE 277
           + DW  V E   R ++D+      SE  V  +
Sbjct: 730 DQDWYAVRESKSRDFYDMGILECESEKDVYQQ 761


>gb|ABF98547.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1449

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +2

Query: 11  VLFKYDWVKLPNG--VKLDNESKLLLVNLSNMLGSSQ-MNDEPFILTEHVSQVCYSKDPV 181
           VLFK DW+KL  G  VK D    + LVN +++  ++  + DEPFIL    +QV Y +DP+
Sbjct: 669 VLFKCDWIKLSRGKGVKKDKYG-VTLVNFNHLSNNTNSLADEPFILASQATQVYYVRDPI 727

Query: 182 NLDWLVVIEVPRRVYFDLDSTRVVSENIVVDE 277
           + DW  V E   R ++D+      SE  V  +
Sbjct: 728 DQDWYAVRESKSRDFYDMGILECESEKDVYQQ 759


>gb|AAP53710.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
            Japonica Group]
          Length = 1486

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +2

Query: 11   VLFKYDWVKLPNG--VKLDNESKLLLVNLSNMLGSSQ-MNDEPFILTEHVSQVCYSKDPV 181
            VLFK DW+KL  G  VK D    + LVN +++  ++  + DEPFIL    +QV Y +DP+
Sbjct: 808  VLFKCDWIKLSRGKGVKKDKYG-VTLVNFNHLSNNTNSLVDEPFILASQATQVYYVRDPI 866

Query: 182  NLDWLVVIEVPRRVYFDLDSTRVVSENIVVDE 277
            + DW  V E   R ++D+      SE  V  +
Sbjct: 867  DQDWYAVRESKPRDFYDMGILECESEEDVYQQ 898


>ref|XP_003634239.1| PREDICTED: uncharacterized protein LOC100854961 [Vitis vinifera]
          Length = 982

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/103 (33%), Positives = 54/103 (52%)
 Frame = +2

Query: 14   LFKYDWVKLPNGVKLDNESKLLLVNLSNMLGSSQMNDEPFILTEHVSQVCYSKDPVNLDW 193
            +FK DWV   NGVK+D E    LV+LS +   S    +PFIL     QV Y +D V+  W
Sbjct: 866  VFKCDWVDSKNGVKVD-EFGFTLVDLSKIGHKS----DPFILATQAQQVFYVEDQVDPRW 920

Query: 194  LVVIEVPRRVYFDLDSTRVVSENIVVDELFARPIIPERMEDEL 322
             +V+  P+   FD++    +++N +    FA  +   +  DE+
Sbjct: 921  SIVLSRPKMELFDIEGDDNIADNCMEHHPFANGMPNIKSFDEV 963