BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034008
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181604.1| pentatricopeptide repeat-containing protein [Ar...    81   1e-13
ref|XP_002520874.1| pentatricopeptide repeat-containing protein,...    80   2e-13
ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
emb|CBI25349.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arab...    77   1e-12

>ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g40720 gi|330254774|gb|AEC09868.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 36/59 (61%), Positives = 45/59 (76%)
 Frame = -2

Query: 272 NTMIAGVGSHGDCLSATRLFSQMRANGESPDDITFLALISACSYSGLVAEGVRLFHLMK 96
           N MI G GSHGDC++A  LF +M+  GESPDD+TFL+LISAC++SG V EG  +F  MK
Sbjct: 647 NLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMK 705


>ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540005|gb|EEF41583.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 833

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 33/60 (55%), Positives = 48/60 (80%)
 Frame = -2

Query: 272 NTMIAGVGSHGDCLSATRLFSQMRANGESPDDITFLALISACSYSGLVAEGVRLFHLMKV 93
           N+MI G GSHG+C  A  LF +MR++G  PDD+TFL+L+S+C++SGL+ EG+ LF +MK+
Sbjct: 614 NSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKM 673


>ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = -2

Query: 272 NTMIAGVGSHGDCLSATRLFSQMRANGESPDDITFLALISACSYSGLVAEGVRLFHLMKV 93
           N+MIAG GSHG+C  A RLF +M+ +  +PD++TFLALI++CS+SG+V EG+ LF LM++
Sbjct: 617 NSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRI 676


>emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = -2

Query: 272  NTMIAGVGSHGDCLSATRLFSQMRANGESPDDITFLALISACSYSGLVAEGVRLFHLMKV 93
            N+MIAG GSHG+C  A RLF +M+ +  +PD++TFLALI++CS+SG+V EG+ LF LM++
Sbjct: 1022 NSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRI 1081


>ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata] gi|297325726|gb|EFH56146.1| hypothetical protein
            ARALYDRAFT_903365 [Arabidopsis lyrata subsp. lyrata]
          Length = 1359

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = -2

Query: 272  NTMIAGVGSHGDCLSATRLFSQMRANGESPDDITFLALISACSYSGLVAEGVRLFHLMK 96
            N MI G GSHGDC +A  LF +++  GE+PDD+TFL+LISAC++SG V EG   F +MK
Sbjct: 1146 NLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMK 1204