BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033981
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi...   290   9e-77
emb|CBI19956.3| unnamed protein product [Vitis vinifera]              290   9e-77
ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|2...   283   1e-74
ref|XP_002526177.1| pentatricopeptide repeat-containing protein,...   276   1e-72
ref|XP_003602124.1| Pentatricopeptide repeat-containing protein ...   261   5e-68

>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  290 bits (743), Expect = 9e-77
 Identities = 143/193 (74%), Positives = 160/193 (82%)
 Frame = -1

Query: 581 DSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSGD 402
           DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF KM +R++VTW EMIDG ARSGD
Sbjct: 147 DSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGD 206

Query: 401 IVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYC 222
              AR  FD VPSE++NVV WTVMVDGY  N  ME AREVFE MP RNFF WSSMI+GYC
Sbjct: 207 TETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYC 266

Query: 221 KKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIAS 42
           KKG+VKEAR IFDRI  RNLVNWN+LI+GYAQNGF +EALEAFG+MQA+GFEPD VTIAS
Sbjct: 267 KKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIAS 326

Query: 41  MLSACAQLGSLDA 3
           +LSAC+QLG LDA
Sbjct: 327 VLSACSQLGLLDA 339



 Score =  143 bits (361), Expect = 2e-32
 Identities = 82/233 (35%), Positives = 119/233 (51%), Gaps = 41/233 (17%)
 Frame = -1

Query: 578 SRKLFDEMPET--NVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSG 405
           +R+ FD++P    NVVTW  M+DGY +N +M  A  +F  M  R+   WS MI G  + G
Sbjct: 210 ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 269

Query: 404 DIVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNF---------- 255
           ++  AR +FD++P  ++N+V W  ++ GY  NG  EEA E F  M    F          
Sbjct: 270 NVKEARSIFDRIP--VRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASV 327

Query: 254 -----------------------------FVWSSMIAGYCKKGDVKEARVIFDRINKRNL 162
                                        FV + ++  Y K GD+  AR+IF+ +  RN 
Sbjct: 328 LSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNR 387

Query: 161 VNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIASMLSACAQLGSLDA 3
             WN++I+G+A +G  KEALE FGRM+     PD +T  S+LSACA  G ++A
Sbjct: 388 ACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNA 440



 Score = 65.1 bits (157), Expect = 8e-09
 Identities = 31/87 (35%), Positives = 53/87 (60%)
 Frame = -1

Query: 353 NVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRIN 174
           +V++ T +V  Y   G + ++R+VF+ MP RN   W++MI GY   GD K A ++F++++
Sbjct: 128 DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187

Query: 173 KRNLVNWNALIAGYAQNGFCKEALEAF 93
            R  V W  +I G+A++G  + A   F
Sbjct: 188 IRTAVTWIEMIDGFARSGDTETARRFF 214


>emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  290 bits (743), Expect = 9e-77
 Identities = 143/193 (74%), Positives = 160/193 (82%)
 Frame = -1

Query: 581 DSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSGD 402
           DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF KM +R++VTW EMIDG ARSGD
Sbjct: 18  DSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGD 77

Query: 401 IVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYC 222
              AR  FD VPSE++NVV WTVMVDGY  N  ME AREVFE MP RNFF WSSMI+GYC
Sbjct: 78  TETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYC 137

Query: 221 KKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIAS 42
           KKG+VKEAR IFDRI  RNLVNWN+LI+GYAQNGF +EALEAFG+MQA+GFEPD VTIAS
Sbjct: 138 KKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIAS 197

Query: 41  MLSACAQLGSLDA 3
           +LSAC+QLG LDA
Sbjct: 198 VLSACSQLGLLDA 210



 Score =  143 bits (361), Expect = 2e-32
 Identities = 82/233 (35%), Positives = 119/233 (51%), Gaps = 41/233 (17%)
 Frame = -1

Query: 578 SRKLFDEMPET--NVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSG 405
           +R+ FD++P    NVVTW  M+DGY +N +M  A  +F  M  R+   WS MI G  + G
Sbjct: 81  ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 140

Query: 404 DIVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNF---------- 255
           ++  AR +FD++P  ++N+V W  ++ GY  NG  EEA E F  M    F          
Sbjct: 141 NVKEARSIFDRIP--VRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASV 198

Query: 254 -----------------------------FVWSSMIAGYCKKGDVKEARVIFDRINKRNL 162
                                        FV + ++  Y K GD+  AR+IF+ +  RN 
Sbjct: 199 LSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNR 258

Query: 161 VNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIASMLSACAQLGSLDA 3
             WN++I+G+A +G  KEALE FGRM+     PD +T  S+LSACA  G ++A
Sbjct: 259 ACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNA 311



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 30/85 (35%), Positives = 51/85 (60%)
 Frame = -1

Query: 347 VVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRINKR 168
           ++ T +V  Y   G + ++R+VF+ MP RN   W++MI GY   GD K A ++F++++ R
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60

Query: 167 NLVNWNALIAGYAQNGFCKEALEAF 93
             V W  +I G+A++G  + A   F
Sbjct: 61  TAVTWIEMIDGFARSGDTETARRFF 85


>ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|222843923|gb|EEE81470.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  283 bits (725), Expect = 1e-74
 Identities = 136/192 (70%), Positives = 159/192 (82%)
 Frame = -1

Query: 581 DSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSGD 402
           DSRKLF+ MPE NVVTWNAMI GY KNGDM +A VLF KM  R++V+W EMIDG ARSGD
Sbjct: 10  DSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGD 69

Query: 401 IVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYC 222
           +VAAR  F++VP E+KNVV WTVM+DGY S G ME AR +FE MP RNFFVWSSMI+GYC
Sbjct: 70  MVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYC 129

Query: 221 KKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIAS 42
           K G+VKEAR IFDR+  RNLVNWN+LI GY+QNGFC+EAL+AFG+MQ +G+EPD VT+  
Sbjct: 130 KIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVG 189

Query: 41  MLSACAQLGSLD 6
           +LSACAQL  LD
Sbjct: 190 VLSACAQLSLLD 201



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
 Frame = -1

Query: 320 YVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRINKRNLVNWNALI 141
           Y   G + ++R++FE MP RN   W++MI+GY K GD+K A V+FD+++ RN V+W  +I
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 140 AGYAQNGFCKEALEAFGRMQADGFE-PDGVTIASMLSACAQLGSLDA 3
            G+A++G    A   F  +    FE  + VT   M+   A  G ++A
Sbjct: 62  DGFARSGDMVAARRTFNEVP---FELKNVVTWTVMIDGYASKGEMEA 105


>ref|XP_002526177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534554|gb|EEF36253.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 293

 Score =  276 bits (707), Expect = 1e-72
 Identities = 134/184 (72%), Positives = 150/184 (81%)
 Frame = -1

Query: 557 MPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSGDIVAARLLF 378
           MPE NVVTWNAMI GY++N DM +A  LF KM +R+ VTW EMIDG AR+GD+V AR LF
Sbjct: 1   MPERNVVTWNAMISGYVRNRDMKSALGLFEKMSIRTMVTWIEMIDGFARNGDLVTARCLF 60

Query: 377 DQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYCKKGDVKEA 198
           DQVP E KNVV WTVMVDGY S G M +AR +FE MP RN+FVWSSMI+GYCK GDVKEA
Sbjct: 61  DQVPLEQKNVVTWTVMVDGYASKGKMADARILFEEMPDRNYFVWSSMISGYCKLGDVKEA 120

Query: 197 RVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIASMLSACAQL 18
           R IFDRI  RNLVNWN+LI GYAQNGFC+EALEAF  MQADGFEPD +T+  +LSACAQL
Sbjct: 121 RCIFDRIPIRNLVNWNSLICGYAQNGFCEEALEAFENMQADGFEPDEITVVGVLSACAQL 180

Query: 17  GSLD 6
           G LD
Sbjct: 181 GLLD 184



 Score =  135 bits (339), Expect = 7e-30
 Identities = 77/224 (34%), Positives = 113/224 (50%), Gaps = 41/224 (18%)
 Frame = -1

Query: 578 SRKLFDEMP--ETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSG 405
           +R LFD++P  + NVVTW  M+DGY   G M  A +LF +M  R+   WS MI G  + G
Sbjct: 56  ARCLFDQVPLEQKNVVTWTVMVDGYASKGKMADARILFEEMPDRNYFVWSSMISGYCKLG 115

Query: 404 DIVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNF---------- 255
           D+  AR +FD++P  ++N+V W  ++ GY  NG  EEA E FE M    F          
Sbjct: 116 DVKEARCIFDRIP--IRNLVNWNSLICGYAQNGFCEEALEAFENMQADGFEPDEITVVGV 173

Query: 254 -----------------------------FVWSSMIAGYCKKGDVKEARVIFDRINKRNL 162
                                        F+ ++++  Y K GD+  AR IF+ +  +N 
Sbjct: 174 LSACAQLGLLDVGKDVHRMAYNKGIKLNQFIMNALVDMYAKCGDLTTARSIFEGMTYKNN 233

Query: 161 VNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIASMLSA 30
             WNA+I+G+A +G CK+ALE F RM+    +PD +T   +  A
Sbjct: 234 ACWNAMISGFAIHGQCKKALEFFRRMEESNEKPDDITFLILARA 277


>ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491172|gb|AES72375.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  261 bits (668), Expect = 5e-68
 Identities = 125/193 (64%), Positives = 151/193 (78%)
 Frame = -1

Query: 581 DSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSGD 402
           D+RK+FD MPE NVVTWNAMI GYL+NGD  +A + F +M  ++ V+WS+MI G AR+GD
Sbjct: 104 DARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGD 163

Query: 401 IVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYC 222
            + AR  FD+VP E+K+VV+WTVMVDGY   G ME+AREVFE+MP RN+FVWSSM+ GYC
Sbjct: 164 TLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYC 223

Query: 221 KKGDVKEARVIFDRINKRNLVNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIAS 42
           KKGDV EA  IF RI  RNL  WN++IAGY QNG  ++ALEAFG M  DGFEPD  T+ S
Sbjct: 224 KKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVS 283

Query: 41  MLSACAQLGSLDA 3
           +LSACAQLG LDA
Sbjct: 284 VLSACAQLGDLDA 296



 Score =  139 bits (351), Expect = 3e-31
 Identities = 82/229 (35%), Positives = 114/229 (49%), Gaps = 41/229 (17%)
 Frame = -1

Query: 578 SRKLFDEMPET--NVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMIDGLARSG 405
           +RK FD++P    +VV W  M+DGY K G+M  A  +F  M  R+   WS M+ G  + G
Sbjct: 167 ARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKG 226

Query: 404 DIVAARLLFDQVPSEMKNVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNF---------- 255
           D++ A  +F ++P  ++N+ +W  M+ GYV NG  E+A E F  M V  F          
Sbjct: 227 DVMEAEAIFRRIP--VRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSV 284

Query: 254 -----------------------------FVWSSMIAGYCKKGDVKEARVIFDRINKRNL 162
                                        FV S +I  Y K GD+  AR++F+  N+RN+
Sbjct: 285 LSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNV 344

Query: 161 VNWNALIAGYAQNGFCKEALEAFGRMQADGFEPDGVTIASMLSACAQLG 15
             WNA+IAG+A NG C E LE   RMQ      D VT  ++LSACA  G
Sbjct: 345 FCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGG 393



 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 32/90 (35%), Positives = 56/90 (62%)
 Frame = -1

Query: 353 NVVVWTVMVDGYVSNGMMEEAREVFEVMPVRNFFVWSSMIAGYCKKGDVKEARVIFDRIN 174
           +V + T +V  Y   G++ +AR+VF++MP RN   W++MI GY + GD K A + F+ + 
Sbjct: 85  DVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMP 144

Query: 173 KRNLVNWNALIAGYAQNGFCKEALEAFGRM 84
            +  V+W+ +I G+A+NG    A + F ++
Sbjct: 145 GKTRVSWSQMIGGFARNGDTLTARKFFDKV 174