BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033910
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22123.1| polyprotein [Prunus avium]                             129   7e-31
gb|ABG22121.1| polyprotein [Solanum melongena]                        120   2e-27
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          123   2e-26
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     112   2e-26
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   112   3e-26

>gb|ABG22123.1| polyprotein [Prunus avium]
          Length = 276

 Score =  129 bits (323), Expect(2) = 7e-31
 Identities = 62/88 (70%), Positives = 72/88 (81%)
 Frame = +1

Query: 1   VDSDYAGNLDKRRSTTGYVFTLAGAPVSWRSTLQSTVALSTTEAEYMAMTEAMKETIWXX 180
           VDSDYAG+LDKRRSTTG+VFT+AG PVSWRS LQSTVALSTTEAEYMA+TEA+KE IW  
Sbjct: 176 VDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQ 235

Query: 181 XXXXXXXIVQGQLEIHCDSMSAIYLAKN 264
                  + Q  ++++CDS SAIYLAKN
Sbjct: 236 GLLDDLGVQQDHVDVYCDSQSAIYLAKN 263



 Score = 30.0 bits (66), Expect(2) = 7e-31
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 251 IWPRTNQVHHARMKYIDVR 307
           I+   NQVHHAR K+IDVR
Sbjct: 258 IYLAKNQVHHARTKHIDVR 276


>gb|ABG22121.1| polyprotein [Solanum melongena]
          Length = 361

 Score =  120 bits (302), Expect(2) = 2e-27
 Identities = 60/87 (68%), Positives = 69/87 (79%)
 Frame = +1

Query: 4   DSDYAGNLDKRRSTTGYVFTLAGAPVSWRSTLQSTVALSTTEAEYMAMTEAMKETIWXXX 183
           DSDYAG+LDKRRSTTGY+FTLA  PVSW+STLQ+TVALSTTEAEYMA+TEA+KE IW   
Sbjct: 262 DSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEAVKEAIWLHG 321

Query: 184 XXXXXXIVQGQLEIHCDSMSAIYLAKN 264
                 + Q  L +H DS SAI+LAKN
Sbjct: 322 LLEELGVGQKHLMVHSDSQSAIHLAKN 348



 Score = 26.2 bits (56), Expect(2) = 2e-27
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 266 NQVHHARMKYIDVR 307
           NQV HAR K+IDVR
Sbjct: 348 NQVFHARTKHIDVR 361


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  123 bits (308), Expect = 2e-26
 Identities = 65/122 (53%), Positives = 83/122 (68%)
 Frame = +1

Query: 4   DSDYAGNLDKRRSTTGYVFTLAGAPVSWRSTLQSTVALSTTEAEYMAMTEAMKETIWXXX 183
           DSD+AG+LDK+RST+GYVFTL G  VSWRS LQST+ALSTTEAEY+A TEA+KE IW   
Sbjct: 148 DSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKG 207

Query: 184 XXXXXXIVQGQLEIHCDSMSAIYLAKN*PSSSCPYEIY*CAFSPCQRNLEEGDILLTKID 363
                 ++Q  + + CD+ SAI+LAKN    +    I    +   +  +E GD+LL KID
Sbjct: 208 LLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHID-VKYHYVREIIEGGDVLLKKID 266

Query: 364 TK 369
           TK
Sbjct: 267 TK 268


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  112 bits (279), Expect(2) = 2e-26
 Identities = 54/88 (61%), Positives = 65/88 (73%)
 Frame = +1

Query: 1    VDSDYAGNLDKRRSTTGYVFTLAGAPVSWRSTLQSTVALSTTEAEYMAMTEAMKETIWXX 180
            VDSD+AG+LD+RRST GYVFT  G PVSW++TLQ+  ALSTTEAEYMA+TEA KE IW  
Sbjct: 1153 VDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLN 1212

Query: 181  XXXXXXXIVQGQLEIHCDSMSAIYLAKN 264
                   + Q  + + CDS SAI+LAKN
Sbjct: 1213 GLAGQLGVHQEGVVVKCDSQSAIHLAKN 1240



 Score = 32.0 bits (71), Expect(2) = 2e-26
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 266  NQVHHARMKYIDVRFHLVRE 325
            NQV HAR K+ID R+H +R+
Sbjct: 1240 NQVFHARTKHIDARYHRIRD 1259


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  112 bits (280), Expect(2) = 3e-26
 Identities = 53/88 (60%), Positives = 67/88 (76%)
 Frame = +1

Query: 1    VDSDYAGNLDKRRSTTGYVFTLAGAPVSWRSTLQSTVALSTTEAEYMAMTEAMKETIWXX 180
            VD+DYAGN+D R+S TGYVFT  G  VSW++ LQS VALSTTEAEYMAMTEA+KE IW  
Sbjct: 1059 VDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLK 1118

Query: 181  XXXXXXXIVQGQLEIHCDSMSAIYLAKN 264
                   + +G++ ++CD+ SAI+LAKN
Sbjct: 1119 GITEELAMYRGKVVVYCDNQSAIHLAKN 1146



 Score = 30.8 bits (68), Expect(2) = 3e-26
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 266  NQVHHARMKYIDVRFHLVREI 328
            NQ  H R K+IDVR H VR+I
Sbjct: 1146 NQSFHERSKHIDVRLHFVRDI 1166