BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033773
         (539 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]      75   5e-12
dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]             75   5e-12
ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|2...    75   6e-12
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus comm...    73   2e-11

>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score = 75.5 bits (184), Expect = 5e-12
 Identities = 49/96 (51%), Positives = 62/96 (64%), Gaps = 9/96 (9%)
 Frame = -3

Query: 474  RKRGPAA--KKPLLS--QKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGD 313
            +KRG AA  K+P  S  QKL+TD+LKPAE    SP+ KVRK+R SPFNKKS SV+GR+G 
Sbjct: 1343 KKRGTAANKKQPQTSSGQKLLTDMLKPAESSRASPEPKVRKMRASPFNKKSGSVMGRVGL 1402

Query: 312  TEQXXXXXXXXXSP---VDANEVVAAKPRPQRANRK 214
             ++         SP     +   VAA+ RPQRANR+
Sbjct: 1403 ADEMTESDDKVDSPSAEERSEAPVAARARPQRANRR 1438


>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score = 75.5 bits (184), Expect = 5e-12
 Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
 Frame = -3

Query: 474  RKRGPAAKKP--LLSQKLITDVLKPAEVGSPDKKVRKLRPSPFNKKSSSVLGRIGDTEQX 301
            +KRGP+AK+   L+ QKLIT+VLKPA   SP+KKVR++R SPFNKKSSS+LG+  + +  
Sbjct: 1349 KKRGPSAKQSSQLVGQKLITEVLKPAADDSPEKKVRRMRESPFNKKSSSILGKTINIDDD 1408

Query: 300  XXXXXXXXSPVDANEVVAAKPRPQRANRKAA 208
                    S ++     AA  RP+RANR  A
Sbjct: 1409 DEEETSGTSSMNEG---AAAARPKRANRGKA 1436


>ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1|
            predicted protein [Populus trichocarpa]
          Length = 1482

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
 Frame = -3

Query: 474  RKRGPAAKKPL-LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQ 304
            ++RGPA+++   L QKL+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGRI   + 
Sbjct: 1362 KRRGPASQQSQGLGQKLLTEMLKPAEGAGISPEKKVRKVRASPFNKKSGSVLGRIHKEDD 1421

Query: 303  XXXXXXXXXSPVDANEV-VAAKPRPQRANRK 214
                     S  + + + V A+ RPQRANRK
Sbjct: 1422 TGSEPMSASSSENTDVIDVPARARPQRANRK 1452


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
            predicted protein [Populus trichocarpa]
          Length = 1468

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
 Frame = -3

Query: 474  RKRGPAAKKPL-LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQ 304
            ++RGPA+K+   L Q+L+T++LKPAE    SP+KKVRK+R SPFNKKS S+LG I   + 
Sbjct: 1352 KRRGPASKQSQGLGQQLLTEMLKPAEESGISPEKKVRKMRASPFNKKSGSLLGGIHKGDD 1411

Query: 303  XXXXXXXXXSPVDANEV-VAAKPRPQRANRK 214
                     +  +A+ + V AK RPQRANRK
Sbjct: 1412 TGIETMPASTSENADVIDVPAKARPQRANRK 1442


>ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
            gi|223543074|gb|EEF44609.1| DNA topoisomerase II,
            putative [Ricinus communis]
          Length = 1212

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 8/95 (8%)
 Frame = -3

Query: 474  RKRGPAAKKPL-LSQKLITDVLKPAEVG--SPDKKVRKLRPSPFNKKSSSVLGRIGDTEQ 304
            +KRGP  K+   L QKL+T++LKPAE    SP+KKVRK+R SPFNKKS SVLGR+    +
Sbjct: 1079 KKRGPTKKESQGLGQKLLTEMLKPAENPGISPEKKVRKMRASPFNKKSGSVLGRVAKGSE 1138

Query: 303  XXXXXXXXXSPVDANEV-----VAAKPRPQRANRK 214
                     S   ++ +     V A+ RPQRANRK
Sbjct: 1139 ATGSEEMSGSTSTSSNMEEITEVPARARPQRANRK 1173