BLASTX nr result
ID: Coptis24_contig00033620
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033620
(390 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002879469.1| pentatricopeptide repeat-containing protein ... 90 2e-19
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi... 98 2e-19
emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera] 98 2e-19
ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana] ... 92 4e-19
ref|NP_001189950.1| uncharacterized protein [Arabidopsis thalian... 92 4e-19
>ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325308|gb|EFH55728.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 583
Score = 90.1 bits (222), Expect(2) = 2e-19
Identities = 42/89 (47%), Positives = 56/89 (62%)
Frame = -2
Query: 269 YGLDLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFE 90
+GLD +V V FY CGD A +VFD M K VV WN+++SG+ QNGL+ED +RVF
Sbjct: 138 FGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFY 197
Query: 89 LMRLEGVRPNDVTMISVISVCAQKEDLEL 3
MR G P+ T +S++S CAQ + L
Sbjct: 198 QMRESGFEPDSATFVSLLSACAQTGAISL 226
Score = 30.4 bits (67), Expect(2) = 2e-19
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 388 HAFIVFVQMCREFVEPQTHTFAFVFKAC----ALESGKLVHC 275
H + +M V P +TF V K+C AL+ GK VHC
Sbjct: 90 HCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHC 131
Score = 57.4 bits (137), Expect(2) = 4e-08
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Frame = -2
Query: 293 WEISTLCCYGLDLFVANTT--VHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNG 120
W + GLD+ V T ++ Y CGD A +VFD+M +V W A+IS Y +G
Sbjct: 229 WVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHG 288
Query: 119 LSEDGLRVFELMRLE-GVRPNDVTMISVISVCA 24
+ + +F M + G PN+VT ++V+S CA
Sbjct: 289 YGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACA 321
Score = 24.6 bits (52), Expect(2) = 4e-08
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -3
Query: 385 AFIVFVQMCREFVEPQTHTFAFVFKAC----ALESGKLVH 278
A VF QM EP + TF + AC A+ G VH
Sbjct: 192 AIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVH 231
>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 97.8 bits (242), Expect(2) = 2e-19
Identities = 41/86 (47%), Positives = 65/86 (75%)
Frame = -2
Query: 260 DLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFELMR 81
D+FV+N +H +SCGD A K+FD+ V+D+V+WN++I+GYV+ G + + L + M+
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200
Query: 80 LEGVRPNDVTMISVISVCAQKEDLEL 3
+EG++P++VTMI V+S CAQ EDL+L
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDL 226
Score = 22.3 bits (46), Expect(2) = 2e-19
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 346 EPQTHTFAFVFKACA 302
+P +T+ +FKACA
Sbjct: 104 KPDNYTYPLLFKACA 118
Score = 63.9 bits (154), Expect = 1e-08
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = -2
Query: 242 TTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFELMRLEGVRP 63
T V Y G A K+FDEM KDVV WNA+I GYV ++ L +F M+ + P
Sbjct: 279 TMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINP 338
Query: 62 NDVTMISVISVCAQKEDLEL 3
++VTM+S +S C+Q L++
Sbjct: 339 DEVTMVSCLSACSQLGALDV 358
>emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 97.8 bits (242), Expect(2) = 2e-19
Identities = 41/86 (47%), Positives = 65/86 (75%)
Frame = -2
Query: 260 DLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFELMR 81
D+FV+N +H +SCGD A K+FD+ V+D+V+WN++I+GYV+ G + + L + M+
Sbjct: 113 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 172
Query: 80 LEGVRPNDVTMISVISVCAQKEDLEL 3
+EG++P++VTMI V+S CAQ EDL+L
Sbjct: 173 VEGIKPDEVTMIGVVSSCAQLEDLDL 198
Score = 22.3 bits (46), Expect(2) = 2e-19
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 346 EPQTHTFAFVFKACA 302
+P +T+ +FKACA
Sbjct: 76 KPDNYTYPLLFKACA 90
Score = 66.2 bits (160), Expect = 3e-09
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 22/112 (19%)
Frame = -2
Query: 272 CY----GLDLFV--ANTTVHFYLSCGDCV----------------WAEKVFDEMSVKDVV 159
CY GL L V AN + Y+ CG+ W +FDEM KDVV
Sbjct: 204 CYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVV 263
Query: 158 TWNAVISGYVQNGLSEDGLRVFELMRLEGVRPNDVTMISVISVCAQKEDLEL 3
WNA+I GYV ++ L +F M+ + P++VTM+S +S C+Q L++
Sbjct: 264 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 315
>ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein
[Arabidopsis thaliana]
Length = 938
Score = 92.0 bits (227), Expect(2) = 4e-19
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Frame = -2
Query: 269 YGLDLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRV-F 93
Y DLFV N+ VHFY CG+ A KVFDEMS ++VV+W ++I GY + ++D + + F
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 92 ELMRLEGVRPNDVTMISVISVCAQKEDLE 6
++R E V PN VTM+ VIS CA+ EDLE
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLE 253
Score = 27.3 bits (59), Expect(2) = 4e-19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 385 AFIVFVQMCREFVEPQTHTFAFVFKACALESGK 287
A ++F++M + P +TF F ACA K
Sbjct: 118 AILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150
Score = 61.2 bits (147), Expect = 8e-08
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = -2
Query: 260 DLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFELMR 81
DL V+ V Y+ C A+++FDE ++ NA+ S YV+ GL+ + L VF LM
Sbjct: 271 DLMVS-ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329
Query: 80 LEGVRPNDVTMISVISVCAQKEDL 9
GVRP+ ++M+S IS C+Q ++
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNI 353
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -2
Query: 245 NTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVF-ELMRLEGV 69
N+ V Y+ G+ A + F+ M K++V+WN +ISG VQ L E+ + VF + EGV
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Query: 68 RPNDVTMISVISVCAQKEDLEL 3
+ VTM+S+ S C L+L
Sbjct: 467 NADGVTMMSIASACGHLGALDL 488
>ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g22690 gi|9279687|dbj|BAB01244.1| unnamed protein
product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein
[Arabidopsis thaliana]
Length = 842
Score = 92.0 bits (227), Expect(2) = 4e-19
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Frame = -2
Query: 269 YGLDLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRV-F 93
Y DLFV N+ VHFY CG+ A KVFDEMS ++VV+W ++I GY + ++D + + F
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 92 ELMRLEGVRPNDVTMISVISVCAQKEDLE 6
++R E V PN VTM+ VIS CA+ EDLE
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLE 253
Score = 27.3 bits (59), Expect(2) = 4e-19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 385 AFIVFVQMCREFVEPQTHTFAFVFKACALESGK 287
A ++F++M + P +TF F ACA K
Sbjct: 118 AILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150
Score = 61.2 bits (147), Expect = 8e-08
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = -2
Query: 260 DLFVANTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVFELMR 81
DL V+ V Y+ C A+++FDE ++ NA+ S YV+ GL+ + L VF LM
Sbjct: 271 DLMVS-ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329
Query: 80 LEGVRPNDVTMISVISVCAQKEDL 9
GVRP+ ++M+S IS C+Q ++
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNI 353
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -2
Query: 245 NTTVHFYLSCGDCVWAEKVFDEMSVKDVVTWNAVISGYVQNGLSEDGLRVF-ELMRLEGV 69
N+ V Y+ G+ A + F+ M K++V+WN +ISG VQ L E+ + VF + EGV
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Query: 68 RPNDVTMISVISVCAQKEDLEL 3
+ VTM+S+ S C L+L
Sbjct: 467 NADGVTMMSIASACGHLGALDL 488