BLASTX nr result

ID: Coptis24_contig00033420 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033420
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314468.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
ref|XP_003631592.1| PREDICTED: uncharacterized protein LOC100854...    60   1e-07
emb|CBI37684.3| unnamed protein product [Vitis vinifera]               60   1e-07

>ref|XP_002314468.1| predicted protein [Populus trichocarpa] gi|222863508|gb|EEF00639.1|
           predicted protein [Populus trichocarpa]
          Length = 1117

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
 Frame = -2

Query: 329 DLEPLEDIFSQPAVSNARAGVKFQPKAKPQPRKVKHVTVPTNPTNAGKESFVIHQDTVHP 150
           DL+P +DI  +PA++NAR G KFQPKAKP+P+KV+ V +P  P+ A KE  V    T   
Sbjct: 4   DLDPFDDILPKPALTNARLGGKFQPKAKPRPKKVEFVPIPFPPSKA-KEKAVAASQTSLD 62

Query: 149 VSLTQVP-----DRLPCTV 108
            +++  P     ++L C +
Sbjct: 63  TNISVQPFGIMDEKLTCQI 81


>ref|XP_003631592.1| PREDICTED: uncharacterized protein LOC100854024 [Vitis vinifera]
          Length = 1053

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = -2

Query: 329 DLEPLEDIFSQPAVSNARAGVKFQPKAKPQPRKVKHVTVPTNPTNAGKESFV 174
           DL+PL+D+  +PA  NARAG KFQPKAK +PRK    +VP+  +NA KE  +
Sbjct: 4   DLDPLDDVLPEPAAINARAGGKFQPKAKARPRKGTSASVPSTISNATKEKTI 55


>emb|CBI37684.3| unnamed protein product [Vitis vinifera]
          Length = 992

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = -2

Query: 329 DLEPLEDIFSQPAVSNARAGVKFQPKAKPQPRKVKHVTVPTNPTNAGKESFV 174
           DL+PL+D+  +PA  NARAG KFQPKAK +PRK    +VP+  +NA KE  +
Sbjct: 4   DLDPLDDVLPEPAAINARAGGKFQPKAKARPRKGTSASVPSTISNATKEKTI 55


Top