BLASTX nr result
ID: Coptis24_contig00033386
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033386
(365 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27251.3| unnamed protein product [Vitis vinifera] 144 6e-33
ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat... 144 6e-33
ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 128 4e-28
ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat... 128 4e-28
ref|XP_002512122.1| pentatricopeptide repeat-containing protein,... 122 4e-26
>emb|CBI27251.3| unnamed protein product [Vitis vinifera]
Length = 382
Score = 144 bits (364), Expect = 6e-33
Identities = 70/120 (58%), Positives = 85/120 (70%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LIK YVW F+EAVSLYH+MVY F++PS+LKACSG D++ G K HGRVIK
Sbjct: 80 LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKC 139
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G E D VVETSLLCMY E LD K FD M +RDVVAWSS+V ++V+NG+ +GL +F
Sbjct: 140 GFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMF 199
>ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 144 bits (364), Expect = 6e-33
Identities = 70/120 (58%), Positives = 85/120 (70%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LIK YVW F+EAVSLYH+MVY F++PS+LKACSG D++ G K HGRVIK
Sbjct: 70 LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKC 129
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G E D VVETSLLCMY E LD K FD M +RDVVAWSS+V ++V+NG+ +GL +F
Sbjct: 130 GFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMF 189
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/120 (33%), Positives = 64/120 (53%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
+I + N EA++L+ QM Y K + S+++ACS L + G H ++I
Sbjct: 475 MICGFSQNGYSVEAITLFDQM-YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMY 533
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
GL D ++T+L MYS+ L VFD MS R +V+WS M++ Y +G++ + LF
Sbjct: 534 GLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLF 593
Score = 59.7 bits (143), Expect = 2e-07
Identities = 35/120 (29%), Positives = 64/120 (53%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LI + N +EA+ L+ QM Q + + S L AC +S G + HG +IK+
Sbjct: 375 LISIFTRNGQPEEALLLFVQM-QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT 433
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G F+ V+ +L+ MY++ + + K+F+ + + +V W+SM+ + +NG + + LF
Sbjct: 434 G-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLF 492
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/120 (25%), Positives = 61/120 (50%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
++ N+V N E + ++ QM+ ++ S+ +ACS L + G HG V++
Sbjct: 172 IVLNFVQNGQASEGLDMFSQMI-SEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRR 230
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
+E + + SL+ MY + L + +++F+ + R W+ M+S Y ++G + L +F
Sbjct: 231 EIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVF 290
>ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 128 bits (322), Expect = 4e-28
Identities = 59/121 (48%), Positives = 86/121 (71%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
L+K++VWN ++EA+SLYHQM+ +Q + +PS+L+ACSG D+ G + HGR+IKS
Sbjct: 70 LLKSHVWNGCYQEAISLYHQML-SQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKS 128
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G + D VV T+LL +Y E LD+ +KVF M +RD+V+WSS++SS V NG + +GL F
Sbjct: 129 GFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAF 188
Query: 5 R 3
R
Sbjct: 189 R 189
Score = 68.2 bits (165), Expect = 7e-10
Identities = 40/120 (33%), Positives = 68/120 (56%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
+I N +A+SL+ M P I + + S+++ACS L + G H ++I
Sbjct: 474 MISGLSQNGYSTKAISLFDLMYVTCPEI-GEVAFVSVIQACSHLGFLEKGKWIHHKLITC 532
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G+ +ET+L+ MY++ L ++VFD MS R VV+WSS++SSY +G++ + + LF
Sbjct: 533 GVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLF 592
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/120 (29%), Positives = 65/120 (54%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
+I + V N E + + MV ++ + ++++AC L + HG ++K
Sbjct: 171 IISSVVENGEINEGLDAFRCMV-SEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKR 229
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G+E DR V++SL+ MY++ SL + + VF+ ++ R W++M+SSY G + + L LF
Sbjct: 230 GIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALF 289
Score = 60.1 bits (144), Expect = 2e-07
Identities = 40/120 (33%), Positives = 56/120 (46%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LI Y KE V L+ +M Q ++ F S L A ++ G + HG VIK
Sbjct: 374 LISVYAQKGLLKETVDLFVRM-QKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKR 432
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
D V SL+ MYS+ +D +FD M + VV W+SM+S +NG + LF
Sbjct: 433 PF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLF 491
>ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 128 bits (322), Expect = 4e-28
Identities = 59/121 (48%), Positives = 86/121 (71%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
L+K++VWN ++EA+SLYHQM+ +Q + +PS+L+ACSG D+ G + HGR+IKS
Sbjct: 70 LLKSHVWNGCYQEAISLYHQML-SQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKS 128
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G + D VV T+LL +Y E LD+ +KVF M +RD+V+WSS++SS V NG + +GL F
Sbjct: 129 GFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAF 188
Query: 5 R 3
R
Sbjct: 189 R 189
Score = 68.2 bits (165), Expect = 7e-10
Identities = 40/120 (33%), Positives = 68/120 (56%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
+I N +A+SL+ M P I + + S+++ACS L + G H ++I
Sbjct: 474 MISGLSQNGYSTKAISLFDLMYVTCPEI-GEVAFVSVIQACSHLGFLEKGKWIHHKLITC 532
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G+ +ET+L+ MY++ L ++VFD MS R VV+WSS++SSY +G++ + + LF
Sbjct: 533 GVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLF 592
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/120 (29%), Positives = 65/120 (54%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
+I + V N E + + MV ++ + ++++AC L + HG ++K
Sbjct: 171 IISSVVENGEINEGLDAFRCMV-SEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKR 229
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
G+E DR V++SL+ MY++ SL + + VF+ ++ R W++M+SSY G + + L LF
Sbjct: 230 GIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALF 289
Score = 60.1 bits (144), Expect = 2e-07
Identities = 40/120 (33%), Positives = 56/120 (46%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LI Y KE V L+ +M Q ++ F S L A ++ G + HG VIK
Sbjct: 374 LISVYAQKGLLKETVDLFVRM-QKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKR 432
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
D V SL+ MYS+ +D +FD M + VV W+SM+S +NG + LF
Sbjct: 433 PF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLF 491
>ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549302|gb|EEF50791.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 800
Score = 122 bits (305), Expect = 4e-26
Identities = 61/121 (50%), Positives = 86/121 (71%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LIK +VW++ EA+SLY++M+Y Q I FI+ S+L+AC+G +++ G + HGR+IK
Sbjct: 70 LIKCHVWSNFCGEAISLYNKMIYKQIPI-SDFIFSSVLRACAGFGNLDVGEEVHGRIIKY 128
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
GL+ D VVETSLL MY + L KKVFD M+ RD+V+WSS++S YV NG +GL +F
Sbjct: 129 GLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMF 188
Query: 5 R 3
R
Sbjct: 189 R 189
Score = 61.6 bits (148), Expect = 6e-08
Identities = 39/120 (32%), Positives = 61/120 (50%)
Frame = -1
Query: 365 LIKNYVWNSSFKEAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKS 186
LI Y FKEA+ ++ QM Q I F S + AC+ + + G + HG IK
Sbjct: 373 LISVYASQGLFKEALGIFVQM-QRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKR 431
Query: 185 GLEFDRVVETSLLCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
+ D V+ SL+ MYS+ +D +FD + + VVAW+SM+ + + G + + LF
Sbjct: 432 HI-LDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLF 490
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/108 (30%), Positives = 59/108 (54%)
Frame = -1
Query: 329 EAVSLYHQMVYAQPYICKKFIYPSLLKACSGLSDVNTGCKFHGRVIKSGLEFDRVVETSL 150
EA+ L+ QM Y + + + ++ACS + + G H ++I G++ D ++T+L
Sbjct: 485 EAIRLFDQM-YLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTAL 543
Query: 149 LCMYSEFRSLDAVKKVFDGMSVRDVVAWSSMVSSYVRNGRVYDGLGLF 6
+ MY++ L +VFD MS R VV+WS+M+ +G + + LF
Sbjct: 544 IDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLF 591