BLASTX nr result
ID: Coptis24_contig00033361
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033361 (316 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi... 154 1e-35 emb|CBI40853.3| unnamed protein product [Vitis vinifera] 154 1e-35 ref|XP_002864963.1| pentatricopeptide repeat-containing protein ... 150 1e-34 ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi... 145 3e-33 ref|NP_201360.1| pentatricopeptide repeat-containing protein [Ar... 144 6e-33 >ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like [Vitis vinifera] Length = 751 Score = 154 bits (388), Expect = 1e-35 Identities = 71/105 (67%), Positives = 91/105 (86%) Frame = -2 Query: 315 SYAQGGYGREAVRLFDQMQNLGLEPNDMTYLSVLSACSNAGLLDEGCRIFFSLKSNGNVD 136 SYAQ G+G EA++LF M++ GLEPN++T+L VLSAC+NAGLL+EGC IF S +++GN++ Sbjct: 454 SYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIE 513 Query: 135 LSRDHYACMVDLLGRAGRLEEAEWLIAQVENPDVVLWRTLLSACK 1 L++DHYACMVDLLGRAGRL+EAE LI QV DVV+WRTLLSAC+ Sbjct: 514 LTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACR 558 >emb|CBI40853.3| unnamed protein product [Vitis vinifera] Length = 749 Score = 154 bits (388), Expect = 1e-35 Identities = 71/105 (67%), Positives = 91/105 (86%) Frame = -2 Query: 315 SYAQGGYGREAVRLFDQMQNLGLEPNDMTYLSVLSACSNAGLLDEGCRIFFSLKSNGNVD 136 SYAQ G+G EA++LF M++ GLEPN++T+L VLSAC+NAGLL+EGC IF S +++GN++ Sbjct: 423 SYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIE 482 Query: 135 LSRDHYACMVDLLGRAGRLEEAEWLIAQVENPDVVLWRTLLSACK 1 L++DHYACMVDLLGRAGRL+EAE LI QV DVV+WRTLLSAC+ Sbjct: 483 LTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACR 527 >ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 720 Score = 150 bits (379), Expect = 1e-34 Identities = 71/105 (67%), Positives = 89/105 (84%) Frame = -2 Query: 315 SYAQGGYGREAVRLFDQMQNLGLEPNDMTYLSVLSACSNAGLLDEGCRIFFSLKSNGNVD 136 SYAQ G+GREA+ LF++M NLGL+PND+T LSVL AC+N+GL++EGC +F S + + + Sbjct: 425 SYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKD-KIM 483 Query: 135 LSRDHYACMVDLLGRAGRLEEAEWLIAQVENPDVVLWRTLLSACK 1 L+ DHYACMVD+LGRAGRLEEAE LI +V NPD+VLWRTLLSACK Sbjct: 484 LTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSACK 528 >ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like [Glycine max] Length = 676 Score = 145 bits (366), Expect = 3e-33 Identities = 62/105 (59%), Positives = 90/105 (85%) Frame = -2 Query: 315 SYAQGGYGREAVRLFDQMQNLGLEPNDMTYLSVLSACSNAGLLDEGCRIFFSLKSNGNVD 136 +YAQ G+G EA+ LF++++N+GL PN +T++S+L AC+NAGL++EGC+IF S+++N N++ Sbjct: 379 AYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIE 438 Query: 135 LSRDHYACMVDLLGRAGRLEEAEWLIAQVENPDVVLWRTLLSACK 1 L+ DH+ CM+DLLGR+ RLEEA LI +V NPDVVLWRTLL++CK Sbjct: 439 LTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCK 483 >ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana] gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 738 Score = 144 bits (364), Expect = 6e-33 Identities = 70/105 (66%), Positives = 87/105 (82%) Frame = -2 Query: 315 SYAQGGYGREAVRLFDQMQNLGLEPNDMTYLSVLSACSNAGLLDEGCRIFFSLKSNGNVD 136 SYAQ G+GREA+ LF++M NLGL+PND+T LSVL AC+N+ L++EGC +F S + + + Sbjct: 443 SYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKD-KIM 501 Query: 135 LSRDHYACMVDLLGRAGRLEEAEWLIAQVENPDVVLWRTLLSACK 1 L+ DHYACMVDLLGRAGRLEEAE L +V NPD+VLWRTLLSACK Sbjct: 502 LTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLLSACK 546