BLASTX nr result
ID: Coptis24_contig00033349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033349
(580 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002864047.1| hypothetical protein ARALYDRAFT_918034 [Arab... 144 9e-58
ref|XP_003625272.1| Pre-mRNA-splicing factor CWC22-like protein ... 129 3e-51
ref|XP_003625287.1| Pre-mRNA-splicing factor CWC22-like protein ... 127 5e-50
ref|XP_002733202.1| PREDICTED: LEThal family member (let-858)-li... 103 1e-43
gb|EGE05229.1| pre-mRNA-splicing factor cwc22 [Trichophyton equi... 105 3e-43
>ref|XP_002864047.1| hypothetical protein ARALYDRAFT_918034 [Arabidopsis lyrata subsp.
lyrata] gi|297309882|gb|EFH40306.1| hypothetical protein
ARALYDRAFT_918034 [Arabidopsis lyrata subsp. lyrata]
Length = 604
Score = 144 bits (362), Expect(2) = 9e-58
Identities = 70/93 (75%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Frame = -2
Query: 531 KMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLLECCSQE 355
+M + DET T VNLRR IYLTIMS V+FEE GHKL +I L PGQEMELCIMLLECCSQE
Sbjct: 367 EMRISDETATNLVNLRRTIYLTIMSTVDFEEAGHKLPKIKLEPGQEMELCIMLLECCSQE 426
Query: 354 QTYLAYYGLLGQRLCMINKIHQQNFETCFVKQY 256
+TYL YYGLLGQR CM+ KIHQ NFE CFV+QY
Sbjct: 427 KTYLPYYGLLGQRFCMLKKIHQANFEKCFVQQY 459
Score = 105 bits (262), Expect(2) = 9e-58
Identities = 55/92 (59%), Positives = 65/92 (70%)
Frame = -1
Query: 277 DVLCQAVLSYIRLTEEDTTXXXXXXXXXXXRELVEQLGMQLLNERLKVPEMLGSFESIFP 98
D L VL YIRLTE+ TT +L + LG+++LNERL+ P M S ESIFP
Sbjct: 484 DALPWHVLGYIRLTEDYTTSSSRIFVKILFLKLSDDLGIKILNERLQDPTMEESLESIFP 543
Query: 97 KDNPRNTRFAINYFTTIGLGGITEELREYLKH 2
KDNP+NTRFAIN+FT IGLGGITE LREYLK+
Sbjct: 544 KDNPKNTRFAINFFTAIGLGGITENLREYLKN 575
>ref|XP_003625272.1| Pre-mRNA-splicing factor CWC22-like protein [Medicago truncatula]
gi|355500287|gb|AES81490.1| Pre-mRNA-splicing factor
CWC22-like protein [Medicago truncatula]
Length = 241
Score = 129 bits (325), Expect(2) = 3e-51
Identities = 60/98 (61%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = -2
Query: 531 KMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQIT--LPGQEMELCIMLLECCSQ 358
+M + DET+T VNLRRAIYLTIMSC++FEE GHKLL+I GQE++LC M+L+CC
Sbjct: 13 QMQIRDETDTNLVNLRRAIYLTIMSCLDFEEAGHKLLRIIHRQKGQEIQLCNMILQCCRY 72
Query: 357 EQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYCHIY 244
E+ Y YYGLLG+R CMINK++QQNFE CF +Q I+
Sbjct: 73 EKVYRPYYGLLGERFCMINKVYQQNFEKCFAQQLSTIH 110
Score = 98.2 bits (243), Expect(2) = 3e-51
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = -1
Query: 259 VLSYIRLTEEDTTXXXXXXXXXXXRELVEQLGMQLLNERLKVPEMLGSFESIFPKDNPRN 80
VLSYIRLTEEDTT +EL E LG+ +LNERL P M FESIFPKD+ RN
Sbjct: 137 VLSYIRLTEEDTTSASRIFIKILFQELSEHLGIHVLNERLNDPAMQDCFESIFPKDSTRN 196
Query: 79 TRFAINYFTTIGLGGITEELREYLK 5
TRF+IN+FT+IGLG +T+ LR Y K
Sbjct: 197 TRFSINFFTSIGLGELTKNLRVYYK 221
>ref|XP_003625287.1| Pre-mRNA-splicing factor CWC22-like protein [Medicago truncatula]
gi|355500302|gb|AES81505.1| Pre-mRNA-splicing factor
CWC22-like protein [Medicago truncatula]
Length = 455
Score = 127 bits (319), Expect(2) = 5e-50
Identities = 59/97 (60%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Frame = -2
Query: 528 MDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQIT--LPGQEMELCIMLLECCSQE 355
M + DE +T VNLRRAIYLTIMSC++FEE GHKLL+I GQE++LC M+L+CC E
Sbjct: 228 MQIRDEADTNLVNLRRAIYLTIMSCLDFEEAGHKLLRIIHRQKGQEIQLCNMILQCCRYE 287
Query: 354 QTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYCHIY 244
+ Y YYGLLG+R CMINK++QQNFE CF +Q I+
Sbjct: 288 KVYRPYYGLLGERFCMINKVYQQNFEKCFAQQLSTIH 324
Score = 96.3 bits (238), Expect(2) = 5e-50
Identities = 49/86 (56%), Positives = 62/86 (72%)
Frame = -1
Query: 259 VLSYIRLTEEDTTXXXXXXXXXXXRELVEQLGMQLLNERLKVPEMLGSFESIFPKDNPRN 80
VLSYIRLTEEDTT +EL E LG+Q+LN+RL P M FES+FPKD+ +N
Sbjct: 351 VLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIQVLNDRLNDPVMQDCFESLFPKDSTKN 410
Query: 79 TRFAINYFTTIGLGGITEELREYLKH 2
TRF+IN+FT+IGLG +T+ L YLK+
Sbjct: 411 TRFSINFFTSIGLGELTKNLGVYLKN 436
>ref|XP_002733202.1| PREDICTED: LEThal family member (let-858)-like [Saccoglossus
kowalevskii]
Length = 1419
Score = 103 bits (258), Expect(2) = 1e-43
Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Frame = -2
Query: 531 KMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLLECCSQE 355
K ++ D+TET + LRR IYLTI S ++FEE HKLL++ L PGQE ELC M L+CC+Q+
Sbjct: 525 KTEIIDQTETNLIALRRTIYLTIQSSLDFEECAHKLLKVELKPGQEKELCNMFLDCCAQQ 584
Query: 354 QTYLAYYGLLGQRLCMINKIHQQNFETCFVKQY--CH 250
++Y ++GLL QR C + K + Q FE F +QY CH
Sbjct: 585 RSYEKFFGLLSQRFCQLKKEYVQQFEFIFKEQYDTCH 621
Score = 98.2 bits (243), Expect(2) = 1e-43
Identities = 50/92 (54%), Positives = 63/92 (68%)
Frame = -1
Query: 277 DVLCQAVLSYIRLTEEDTTXXXXXXXXXXXRELVEQLGMQLLNERLKVPEMLGSFESIFP 98
D + VLS I L EEDTT +EL E +G+Q LNERLK + FE +FP
Sbjct: 642 DAIAWTVLSCISLNEEDTTSSSRIFVKILFQELSEYMGLQKLNERLKDQFLQPFFEGLFP 701
Query: 97 KDNPRNTRFAINYFTTIGLGGITEELREYLKH 2
+DNP NTRFAIN+FTTIGLGG+T+ELR++LK+
Sbjct: 702 RDNPANTRFAINFFTTIGLGGLTDELRDHLKN 733
>gb|EGE05229.1| pre-mRNA-splicing factor cwc22 [Trichophyton equinum CBS 127.97]
Length = 859
Score = 105 bits (263), Expect(2) = 3e-43
Identities = 50/93 (53%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = -2
Query: 531 KMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITLP-GQEMELCIMLLECCSQE 355
+MD+ D++ T+ VNLRR IYLTIMS ++FEE HKL++I LP G+E EL M++ECCSQE
Sbjct: 403 EMDIKDQSNTDLVNLRRTIYLTIMSSIDFEECCHKLMKINLPTGKESELPSMIIECCSQE 462
Query: 354 QTYLAYYGLLGQRLCMINKIHQQNFETCFVKQY 256
+TY +YGL+G+R IN++ FET F Y
Sbjct: 463 RTYSKFYGLIGERFAKINRLWADLFETAFATYY 495
Score = 95.1 bits (235), Expect(2) = 3e-43
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = -1
Query: 277 DVLCQAVLSYIRLTEEDTTXXXXXXXXXXXRELVEQLGMQLLNERLKVPEMLGSFESIFP 98
D + VLS + L EE+TT ++L E LGM L ERL+ P +L S+E IFP
Sbjct: 520 DAIGWHVLSIVHLNEEETTSSSRIFIKILFQDLAEVLGMTKLQERLRDPILLPSYEGIFP 579
Query: 97 KDNPRNTRFAINYFTTIGLGGITEELREYLKH 2
DNPRNTRF+INYFT+IG+G +TEE+RE+LK+
Sbjct: 580 TDNPRNTRFSINYFTSIGMGVLTEEMREHLKN 611