BLASTX nr result
ID: Coptis24_contig00033341
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033341
(418 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 205 3e-51
ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi... 205 3e-51
emb|CBI32403.3| unnamed protein product [Vitis vinifera] 205 3e-51
ref|XP_002300569.1| predicted protein [Populus trichocarpa] gi|2... 205 3e-51
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera] 204 6e-51
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 205 bits (522), Expect = 3e-51
Identities = 98/137 (71%), Positives = 117/137 (85%)
Frame = -3
Query: 413 SQGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLF 234
+QGT VSIL AY+HVGAL+QGM++HGH +K L D++VGTCLID+Y KCGRL DAM LF
Sbjct: 476 NQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF 535
Query: 233 KQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLID 54
QVPR+SSVPWNAIIS HGIHG GEK+L LF EM++EGVKPDHVTF+SLLSACSH+GL+D
Sbjct: 536 YQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVD 595
Query: 53 QGQQCFKLMQEKYCIQP 3
+G+ F LMQE Y I+P
Sbjct: 596 EGKWFFHLMQE-YGIKP 611
Score = 73.2 bits (178), Expect = 2e-11
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMM 240
P TLVS+ + + VHG ++ G L+ + +G ++D+YAK G ++ A
Sbjct: 372 PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHK 431
Query: 239 LFKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAG 63
+F +P K V WN +ISG+ +G +++ ++ MEE +K + T+VS+L+A +H G
Sbjct: 432 VFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVG 491
Query: 62 LIDQGQQ 42
+ QG +
Sbjct: 492 ALQQGMR 498
Score = 72.4 bits (176), Expect = 4e-11
Identities = 37/113 (32%), Positives = 65/113 (57%)
Frame = -3
Query: 404 TLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQV 225
T+ SILP + +G + +H + +K GL +++V LI++YAK G L DA +F+Q+
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334
Query: 224 PRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHA 66
+ V WN+II+ + + + F +M+ G++PD +T VSL S + +
Sbjct: 335 FLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS 387
Score = 68.2 bits (165), Expect = 7e-10
Identities = 37/116 (31%), Positives = 56/116 (48%)
Frame = -3
Query: 410 QGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFK 231
Q + P L G K+H K+G D++V LI +Y++ G + A LF
Sbjct: 172 QADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFD 231
Query: 230 QVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAG 63
+P + WNA+ISG +G ++L + EM EG+ D VT S+L C+ G
Sbjct: 232 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLG 287
>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 205 bits (522), Expect = 3e-51
Identities = 98/138 (71%), Positives = 116/138 (84%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMML 237
P+QGT VSILPAY+HVGAL+QGMK+HG +K L D++V TCLIDVY KCGRL DAM L
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577
Query: 236 FKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLI 57
F QVP++SSV WNAIIS HGIHG EK+L LFGEM +EGVKPDHVTFVSLLSACSH+G +
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637
Query: 56 DQGQQCFKLMQEKYCIQP 3
++G+ CF+LMQE Y I+P
Sbjct: 638 EEGKWCFRLMQE-YGIKP 654
Score = 78.2 bits (191), Expect = 6e-13
Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMM 240
P TLVS+ + + VHG ++ G L+ D+ +G ++D+YAK G L+ A
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474
Query: 239 LFKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAG 63
+F+ +P K + WN +I+G+ +G +++ ++ MEE + + P+ T+VS+L A +H G
Sbjct: 475 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534
Query: 62 LIDQGQQ 42
+ QG +
Sbjct: 535 ALQQGMK 541
Score = 73.6 bits (179), Expect = 2e-11
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = -3
Query: 404 TLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQV 225
T+VSILP +G + M +H + +K GL D++V LI++YAK G L DA F+Q+
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377
Query: 224 PRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQ 45
V WN+II+ + + + F +M+ G +PD +T VSL A ++ Q +
Sbjct: 378 FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL------ASIVAQSR 431
Query: 44 QC 39
C
Sbjct: 432 DC 433
Score = 68.9 bits (167), Expect = 4e-10
Identities = 37/108 (34%), Positives = 55/108 (50%)
Frame = -3
Query: 386 PAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQVPRKSSV 207
P G L G K+H K+G +++V LI +Y++ G A LF +P +
Sbjct: 223 PVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 282
Query: 206 PWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAG 63
WNA+ISG +G ++L + EM EG+K + VT VS+L C G
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330
>emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 205 bits (522), Expect = 3e-51
Identities = 98/138 (71%), Positives = 116/138 (84%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMML 237
P+QGT VSILPAY+HVGAL+QGMK+HG +K L D++V TCLIDVY KCGRL DAM L
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 344
Query: 236 FKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLI 57
F QVP++SSV WNAIIS HGIHG EK+L LFGEM +EGVKPDHVTFVSLLSACSH+G +
Sbjct: 345 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 404
Query: 56 DQGQQCFKLMQEKYCIQP 3
++G+ CF+LMQE Y I+P
Sbjct: 405 EEGKWCFRLMQE-YGIKP 421
Score = 68.6 bits (166), Expect = 5e-10
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Frame = -3
Query: 386 PAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQVPRKSSV 207
P G L G K+H K+G +++V LI +Y++ G A LF +P +
Sbjct: 123 PVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 182
Query: 206 PWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLL----SACSHAGLIDQGQQC 39
WNA+ISG +G ++L + EM EG+K + VT VS+L + GL+D +
Sbjct: 183 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKV 242
Query: 38 FKLMQEK 18
F+++ K
Sbjct: 243 FEIIPVK 249
Score = 63.5 bits (153), Expect = 2e-08
Identities = 31/104 (29%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = -3
Query: 350 MKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQVPRKSSVPWNAIISGHGIH 171
M++ G +K+ ++ + + +D+YAK G L+ A +F+ +P K + WN +I+G+ +
Sbjct: 207 MRLEG--IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQN 264
Query: 170 GQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQGQQ 42
G +++ ++ MEE + + P+ T+VS+L A +H G + QG +
Sbjct: 265 GLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK 308
>ref|XP_002300569.1| predicted protein [Populus trichocarpa] gi|222847827|gb|EEE85374.1|
predicted protein [Populus trichocarpa]
Length = 568
Score = 205 bits (522), Expect = 3e-51
Identities = 93/138 (67%), Positives = 117/138 (84%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMML 237
P+QGT VSILPAYSHVGAL+QGM++HG +K L SD++VGTCLID+Y KCG+L+DA+ L
Sbjct: 194 PNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISL 253
Query: 236 FKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLI 57
F QVPRK+SVPWNA+IS +G+HG GEK+L LF EM+ E VKPDH+TFVSLLSACSH+GL+
Sbjct: 254 FYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLV 313
Query: 56 DQGQQCFKLMQEKYCIQP 3
Q CF +M+E+Y I+P
Sbjct: 314 SDAQWCFNMMEEEYGIKP 331
Score = 79.3 bits (194), Expect = 3e-13
Identities = 40/114 (35%), Positives = 62/114 (54%)
Frame = -3
Query: 386 PAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQVPRKSSV 207
P G L G K+H +K+G D++V L+ +Y++ G + DA LF +P +
Sbjct: 2 PVVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRG 61
Query: 206 PWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQ 45
WNA+ISG+ +G ++L + EM EGVK D +T S+L C+ G I G+
Sbjct: 62 SWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGK 115
Score = 78.6 bits (192), Expect = 5e-13
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = -3
Query: 404 TLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQV 225
T+ S+LP + VG + G +H + +K GL +++V LI++YAK G L A +F +
Sbjct: 97 TVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL 156
Query: 224 PRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQG 48
K V WN +I+G+ +G +++ ++ MEE E + P+ T+VS+L A SH G + QG
Sbjct: 157 -IKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQG 215
Query: 47 QQ 42
+
Sbjct: 216 MR 217
>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 204 bits (519), Expect = 6e-51
Identities = 97/138 (70%), Positives = 116/138 (84%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMML 237
P+QGT VSILPAY+HVGAL+QGM++HG +K L D++V TCLIDVY KCGRL DAM L
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577
Query: 236 FKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLI 57
F QVP++SSV WNAIIS HGIHG EK+L LFGEM +EGVKPDHVTFVSLLSACSH+G +
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637
Query: 56 DQGQQCFKLMQEKYCIQP 3
++G+ CF+LMQE Y I+P
Sbjct: 638 EEGKWCFRLMQE-YGIKP 654
Score = 74.3 bits (181), Expect = 9e-12
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = -3
Query: 416 PSQGTLVSILPAYSHVGALRQGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMM 240
P TLVS+ + + VHG ++ G L+ D+ +G ++D+YAK G L+ A
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474
Query: 239 LFKQVPRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAG 63
+F+ + K + WN +I+G+ +G +++ ++ MEE + + P+ T+VS+L A +H G
Sbjct: 475 VFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534
Query: 62 LIDQGQQ 42
+ QG +
Sbjct: 535 ALQQGMR 541
Score = 73.6 bits (179), Expect = 2e-11
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = -3
Query: 404 TLVSILPAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQV 225
T+VSILP +G + M +H + +K GL D++V LI++YAK G L DA F+Q+
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377
Query: 224 PRKSSVPWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQ 45
V WN+II+ + + + F +M+ G +PD +T VSL A ++ Q +
Sbjct: 378 FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL------ASIVAQSR 431
Query: 44 QC 39
C
Sbjct: 432 DC 433
Score = 67.8 bits (164), Expect = 9e-10
Identities = 36/108 (33%), Positives = 55/108 (50%)
Frame = -3
Query: 386 PAYSHVGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMMLFKQVPRKSSV 207
P G L G ++H K+G +++V LI +Y++ G A LF +P +
Sbjct: 223 PVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 282
Query: 206 PWNAIISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAG 63
WNA+ISG +G ++L + EM EG+K + VT VS+L C G
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330