BLASTX nr result
ID: Coptis24_contig00033302
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00033302
(371 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR16216.1| unknown [Picea sitchensis] 100 4e-20
gb|ADE77505.1| unknown [Picea sitchensis] 92 5e-18
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 84 8e-18
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] 84 8e-18
emb|CBI39619.3| unnamed protein product [Vitis vinifera] 85 5e-16
>gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 100 bits (248), Expect(2) = 4e-20
Identities = 48/94 (51%), Positives = 67/94 (71%)
Frame = +1
Query: 88 LFCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLG 267
+F +M E++LVSWT MVSGY+Q G+A E L +FY+M + D+K + + ASVL ACAQL
Sbjct: 170 VFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEM-QGEDVKANYVTVASVLPACAQLS 228
Query: 268 SLNYGEMIHGYVVRMGPVVGLEAETSLVDMYAKC 369
L G+ IHGY++R G +G+ +L+DMYAKC
Sbjct: 229 DLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKC 262
Score = 22.7 bits (47), Expect(2) = 4e-20
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 20 VQTAVLNMYVKGGDVVEG*RLF 85
V+ A++NM++K G + + R+F
Sbjct: 150 VENALINMFMKCGSIEDARRVF 171
Score = 69.3 bits (168), Expect(2) = 7e-11
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = +1
Query: 64 CGRLKVVYL-FCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAAS 240
CG L L F M + + W VM+ GY ++G E L L++QM K++ D +S
Sbjct: 59 CGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSS 118
Query: 241 VLQACAQLGSLNYGEMIHGYVVRMGPVVGLEAETSLVDMYAKC 369
VL ACA+L SL+ G++I+ ++ G + + E +L++M+ KC
Sbjct: 119 VLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKC 161
Score = 22.3 bits (46), Expect(2) = 7e-11
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 11 IAEVQTAVLNMYVKGGDV 64
I V+T +LN+YVK G +
Sbjct: 45 IPSVETKLLNLYVKCGSL 62
Score = 59.3 bits (142), Expect = 3e-07
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +1
Query: 94 CEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLGSL 273
C + +++W +++ Y+QNGY +TL LF QM ++ +K ++I ASVL ACA + +L
Sbjct: 308 CAGLKIDVITWNTLITAYAQNGYGDQTLELFQQM-QLRGVKPNSITIASVLSACAAVSAL 366
Query: 274 NYGEMIHGYVVRMGPVVGLEAETSLVDM 357
G+ IH V R + +L+DM
Sbjct: 367 QEGKRIHDLVNRSECKSDICVGNALIDM 394
>gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 92.4 bits (228), Expect(2) = 5e-18
Identities = 46/97 (47%), Positives = 62/97 (63%)
Frame = +1
Query: 76 KVVYLFCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQAC 255
K + LF EM E+ +VSWT +++GY+QNGY E+L +F QM K +K D I SVL AC
Sbjct: 94 KALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRK-TGMKSDRFIMGSVLSAC 152
Query: 256 AQLGSLNYGEMIHGYVVRMGPVVGLEAETSLVDMYAK 366
A L +L G H YVV+ G + + ++LVDMYAK
Sbjct: 153 ADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAK 189
Score = 23.5 bits (49), Expect(2) = 5e-18
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 2 FDSIAEVQTAVLNMYVKGGDVVEG*RLF 85
F+S VQTA+++MY + G + + +F
Sbjct: 41 FESDVVVQTALVHMYARCGSLEDAGHVF 68
>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 84.0 bits (206), Expect(2) = 8e-18
Identities = 43/94 (45%), Positives = 57/94 (60%)
Frame = +1
Query: 88 LFCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLG 267
LF M+E+ V W VM+ GY+QNG +E L LF +MLK A K + + SVL AC QLG
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLSACGQLG 270
Query: 268 SLNYGEMIHGYVVRMGPVVGLEAETSLVDMYAKC 369
+L G +H Y+ G + T+LVDMY+KC
Sbjct: 271 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304
Score = 31.2 bits (69), Expect(2) = 8e-18
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 2 FDSIAEVQTAVLNMYVKGGDVVEG*RLF 85
FDS V+T +L++Y +GGDVV +LF
Sbjct: 155 FDSDLYVRTGLLDVYARGGDVVSAQQLF 182
>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 84.0 bits (206), Expect(2) = 8e-18
Identities = 43/94 (45%), Positives = 57/94 (60%)
Frame = +1
Query: 88 LFCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLG 267
LF M+E+ V W VM+ GY+QNG +E L LF +MLK A K + + SVL AC QLG
Sbjct: 159 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLSACGQLG 217
Query: 268 SLNYGEMIHGYVVRMGPVVGLEAETSLVDMYAKC 369
+L G +H Y+ G + T+LVDMY+KC
Sbjct: 218 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251
Score = 31.2 bits (69), Expect(2) = 8e-18
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 2 FDSIAEVQTAVLNMYVKGGDVVEG*RLF 85
FDS V+T +L++Y +GGDVV +LF
Sbjct: 102 FDSDLYVRTGLLDVYARGGDVVSAQQLF 129
>emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 84.7 bits (208), Expect(2) = 5e-16
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Frame = +1
Query: 88 LFCEMKEKSLVSWTVMVSGYSQNGYASETLTLFYQMLKMADLKLDAIIAASVLQACAQLG 267
LF EM EK +VSW+ ++SGY QNG E L +F +M ++LD ++ SVL ACA L
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLS 278
Query: 268 SLNYGEMIHGYVVRMGPVVGLEAETSLV----DMYAKC 369
+ G+MIHG V+RMG + + +L+ DMY KC
Sbjct: 279 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKC 316
Score = 24.3 bits (51), Expect(2) = 5e-16
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 2 FDSIAEVQTAVLNMYVKGGDVVEG*RLF 85
FDS VQ ++NMY G++ + +LF
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLF 187