BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033300
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ...   226   1e-57
ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi comple...   226   1e-57
ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi comple...   224   6e-57
emb|CBI38715.3| unnamed protein product [Vitis vinifera]              224   6e-57
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]   223   1e-56

>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240852|gb|ABD32710.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355501623|gb|AES82826.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 451

 Score =  226 bits (577), Expect = 1e-57
 Identities = 109/150 (72%), Positives = 130/150 (86%), Gaps = 1/150 (0%)
 Frame = +3

Query: 6   GRSRHFTLMQSLLTRLKSDN-YPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182
           GRS+HF+L+  LL RLKS++  P+TP LFS LI+IY +ANLPDKALNTFY+ML+FN KPL
Sbjct: 86  GRSKHFSLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPL 145

Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362
            KHLN+++ +LVSHR YLRPAFDLFK A  K G+ P+T +YNILMRAFCLNGD+SIAYTL
Sbjct: 146 TKHLNRILDILVSHRNYLRPAFDLFKDA-HKHGVFPDTKSYNILMRAFCLNGDISIAYTL 204

Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452
           FNKMFKRD+ PD++SYRILMQ LCRKSQVN
Sbjct: 205 FNKMFKRDVVPDIQSYRILMQALCRKSQVN 234


>ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like
           [Glycine max]
          Length = 1114

 Score =  226 bits (576), Expect = 1e-57
 Identities = 103/150 (68%), Positives = 133/150 (88%)
 Frame = +3

Query: 3   LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182
           LGRS+HF+L+  LL RLK D++P+TP LF+ LI++Y++A+LPDKALN+FY +L FNCKPL
Sbjct: 102 LGRSKHFSLLDDLLRRLKFDSHPITPTLFTYLIKVYAEADLPDKALNSFYTILHFNCKPL 161

Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362
           PKHLN++++VLVSHR ++RPAF LFK A  ++G+ P+T +YNILMRAFCLNGD+S+AY+L
Sbjct: 162 PKHLNRILEVLVSHRNFIRPAFYLFKDA-HRYGVEPDTKSYNILMRAFCLNGDISVAYSL 220

Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452
           FNKMFKRD+ PD+ESYRILMQ LCRKSQVN
Sbjct: 221 FNKMFKRDLVPDIESYRILMQALCRKSQVN 250


>ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
           vinifera]
          Length = 1105

 Score =  224 bits (571), Expect = 6e-57
 Identities = 106/150 (70%), Positives = 130/150 (86%)
 Frame = +3

Query: 3   LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182
           LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL
Sbjct: 88  LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 147

Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362
           PKHLN+L+Q+LVSHR Y+RPAFDLFK+A  ++G+ P+T +YNILM AFC NGDLSIAYTL
Sbjct: 148 PKHLNRLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 206

Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452
           FN+MFKRD+ PDVESYRILMQGLCRKSQVN
Sbjct: 207 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 236


>emb|CBI38715.3| unnamed protein product [Vitis vinifera]
          Length = 429

 Score =  224 bits (571), Expect = 6e-57
 Identities = 106/150 (70%), Positives = 130/150 (86%)
 Frame = +3

Query: 3   LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182
           LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL
Sbjct: 102 LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 161

Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362
           PKHLN+L+Q+LVSHR Y+RPAFDLFK+A  ++G+ P+T +YNILM AFC NGDLSIAYTL
Sbjct: 162 PKHLNRLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 220

Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452
           FN+MFKRD+ PDVESYRILMQGLCRKSQVN
Sbjct: 221 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 250


>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  223 bits (568), Expect = 1e-56
 Identities = 106/150 (70%), Positives = 129/150 (86%)
 Frame = +3

Query: 3   LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182
           LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL
Sbjct: 57  LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 116

Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362
           PKHLN L+Q+LVSHR Y+RPAFDLFK+A  ++G+ P+T +YNILM AFC NGDLSIAYTL
Sbjct: 117 PKHLNXLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 175

Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452
           FN+MFKRD+ PDVESYRILMQGLCRKSQVN
Sbjct: 176 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 205