BLASTX nr result
ID: Coptis24_contig00033300
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033300 (457 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 226 1e-57 ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi comple... 226 1e-57 ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi comple... 224 6e-57 emb|CBI38715.3| unnamed protein product [Vitis vinifera] 224 6e-57 emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 223 1e-56 >ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 451 Score = 226 bits (577), Expect = 1e-57 Identities = 109/150 (72%), Positives = 130/150 (86%), Gaps = 1/150 (0%) Frame = +3 Query: 6 GRSRHFTLMQSLLTRLKSDN-YPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182 GRS+HF+L+ LL RLKS++ P+TP LFS LI+IY +ANLPDKALNTFY+ML+FN KPL Sbjct: 86 GRSKHFSLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPL 145 Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362 KHLN+++ +LVSHR YLRPAFDLFK A K G+ P+T +YNILMRAFCLNGD+SIAYTL Sbjct: 146 TKHLNRILDILVSHRNYLRPAFDLFKDA-HKHGVFPDTKSYNILMRAFCLNGDISIAYTL 204 Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452 FNKMFKRD+ PD++SYRILMQ LCRKSQVN Sbjct: 205 FNKMFKRDVVPDIQSYRILMQALCRKSQVN 234 >ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Glycine max] Length = 1114 Score = 226 bits (576), Expect = 1e-57 Identities = 103/150 (68%), Positives = 133/150 (88%) Frame = +3 Query: 3 LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182 LGRS+HF+L+ LL RLK D++P+TP LF+ LI++Y++A+LPDKALN+FY +L FNCKPL Sbjct: 102 LGRSKHFSLLDDLLRRLKFDSHPITPTLFTYLIKVYAEADLPDKALNSFYTILHFNCKPL 161 Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362 PKHLN++++VLVSHR ++RPAF LFK A ++G+ P+T +YNILMRAFCLNGD+S+AY+L Sbjct: 162 PKHLNRILEVLVSHRNFIRPAFYLFKDA-HRYGVEPDTKSYNILMRAFCLNGDISVAYSL 220 Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452 FNKMFKRD+ PD+ESYRILMQ LCRKSQVN Sbjct: 221 FNKMFKRDLVPDIESYRILMQALCRKSQVN 250 >ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis vinifera] Length = 1105 Score = 224 bits (571), Expect = 6e-57 Identities = 106/150 (70%), Positives = 130/150 (86%) Frame = +3 Query: 3 LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182 LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL Sbjct: 88 LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 147 Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362 PKHLN+L+Q+LVSHR Y+RPAFDLFK+A ++G+ P+T +YNILM AFC NGDLSIAYTL Sbjct: 148 PKHLNRLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 206 Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452 FN+MFKRD+ PDVESYRILMQGLCRKSQVN Sbjct: 207 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 236 >emb|CBI38715.3| unnamed protein product [Vitis vinifera] Length = 429 Score = 224 bits (571), Expect = 6e-57 Identities = 106/150 (70%), Positives = 130/150 (86%) Frame = +3 Query: 3 LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182 LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL Sbjct: 102 LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 161 Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362 PKHLN+L+Q+LVSHR Y+RPAFDLFK+A ++G+ P+T +YNILM AFC NGDLSIAYTL Sbjct: 162 PKHLNRLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 220 Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452 FN+MFKRD+ PDVESYRILMQGLCRKSQVN Sbjct: 221 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 250 >emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] Length = 422 Score = 223 bits (568), Expect = 1e-56 Identities = 106/150 (70%), Positives = 129/150 (86%) Frame = +3 Query: 3 LGRSRHFTLMQSLLTRLKSDNYPVTPGLFSNLIQIYSDANLPDKALNTFYLMLEFNCKPL 182 LG +R F+LMQ LL RLKS+ Y + P LFS++I+IY +ANLPD+AL TF+ ML+F+ KPL Sbjct: 57 LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 116 Query: 183 PKHLNKLIQVLVSHRGYLRPAFDLFKTAVTKFGIVPNTSTYNILMRAFCLNGDLSIAYTL 362 PKHLN L+Q+LVSHR Y+RPAFDLFK+A ++G+ P+T +YNILM AFC NGDLSIAYTL Sbjct: 117 PKHLNXLLQLLVSHRNYIRPAFDLFKSA-HRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 175 Query: 363 FNKMFKRDIEPDVESYRILMQGLCRKSQVN 452 FN+MFKRD+ PDVESYRILMQGLCRKSQVN Sbjct: 176 FNQMFKRDVAPDVESYRILMQGLCRKSQVN 205