BLASTX nr result
ID: Coptis24_contig00033285
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033285 (487 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003526554.1| PREDICTED: uncharacterized protein LOC100783... 64 6e-12 ref|XP_002309487.1| predicted protein [Populus trichocarpa] gi|2... 69 4e-10 ref|XP_003602893.1| Geranylgeranyl transferase type-2 subunit al... 66 3e-09 ref|XP_002283768.1| PREDICTED: uncharacterized protein LOC100248... 65 4e-09 emb|CAN68129.1| hypothetical protein VITISV_043707 [Vitis vinifera] 65 4e-09 >ref|XP_003526554.1| PREDICTED: uncharacterized protein LOC100783193 [Glycine max] Length = 691 Score = 64.3 bits (155), Expect(2) = 6e-12 Identities = 31/80 (38%), Positives = 48/80 (60%) Frame = +3 Query: 81 EDLTWRPLSSNNSKKAQTWVTFLKFPHTEDDSSKAYPVEVRIGHSQGIVSSSVSKFQLQF 260 E+L W+PLS NNS AQ WV +L + E SK Y VE+ IGHS+GI+SS+ + F Sbjct: 303 EELIWKPLSMNNSNTAQFWVVYLNLGNFELQPSKTYSVEINIGHSKGIISSNGNHFDDPS 362 Query: 261 SFTVCIYSESEAYQIEECRG 320 + ++ ++ + + E +G Sbjct: 363 QISCKVFVQTASSEPTEGQG 382 Score = 30.8 bits (68), Expect(2) = 6e-12 Identities = 12/20 (60%), Positives = 17/20 (85%) Frame = +1 Query: 4 PLILYFNQPVEGLSTSNVQL 63 P+ILYFNQ VEG+++S V + Sbjct: 277 PIILYFNQAVEGINSSTVAI 296 >ref|XP_002309487.1| predicted protein [Populus trichocarpa] gi|222855463|gb|EEE93010.1| predicted protein [Populus trichocarpa] Length = 696 Score = 68.9 bits (167), Expect = 4e-10 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Frame = +3 Query: 84 DLTWRPLSSNNSKKAQTWVTFLKFPHTEDDSSKAYPVEVRIGHSQGIVSSSVSKFQ--LQ 257 D+ W+P+ SNNS+ Q WV LKFP E DS AY +EV +GHSQGI+SSS + Sbjct: 308 DVIWKPILSNNSRTTQVWVGQLKFPEVELDSLGAYTMEVTLGHSQGIISSSGFHYSHPSH 367 Query: 258 FSFTV 272 FSFTV Sbjct: 368 FSFTV 372 >ref|XP_003602893.1| Geranylgeranyl transferase type-2 subunit alpha [Medicago truncatula] gi|355491941|gb|AES73144.1| Geranylgeranyl transferase type-2 subunit alpha [Medicago truncatula] Length = 705 Score = 65.9 bits (159), Expect = 3e-09 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Frame = +3 Query: 81 EDLTWRPLSSNNSKKAQTWVTFLKFPHTEDDSSKAYPVEVRIGHSQGIVSSSVSKF--QL 254 EDL W+PLS+NNS AQ WV +L + + SK Y +E+ IGHS GI+SS+ + Sbjct: 304 EDLVWKPLSTNNSSTAQVWVVYLNMGNMKLQLSKTYSIEINIGHSMGILSSNGYHYGAPS 363 Query: 255 QFSFTVCI 278 Q +F VC+ Sbjct: 364 QITFEVCV 371 >ref|XP_002283768.1| PREDICTED: uncharacterized protein LOC100248920 [Vitis vinifera] Length = 704 Score = 65.5 bits (158), Expect = 4e-09 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Frame = +3 Query: 18 FQSTCRGLKHF*CTIDVMFPM-EDLTWRPLSSNNSKKAQTWVTFLKFPHTEDDSSKAYPV 194 F G+ T+ +F +DL W+PL+++ S AQ WVT L P + S AYP+ Sbjct: 285 FNEAVEGVNSSTVTVKSVFTENKDLVWKPLATSKSCAAQAWVTHLNVPDVKLHPSTAYPI 344 Query: 195 EVRIGHSQGIVSSSVS--KFQLQFSFTVCI 278 EV +G SQGI+S S S +F+FTVC+ Sbjct: 345 EVNLGDSQGIISLSGSHCSHPSRFAFTVCV 374 >emb|CAN68129.1| hypothetical protein VITISV_043707 [Vitis vinifera] Length = 542 Score = 65.5 bits (158), Expect = 4e-09 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Frame = +3 Query: 18 FQSTCRGLKHF*CTIDVMFPM-EDLTWRPLSSNNSKKAQTWVTFLKFPHTEDDSSKAYPV 194 F G+ T+ +F +DL W+PL+++ S AQ WVT L P + S AYP+ Sbjct: 285 FNEAVEGVNSSTVTVKSVFTENKDLVWKPLATSKSCAAQAWVTHLNVPDVKLHPSTAYPI 344 Query: 195 EVRIGHSQGIVSSSVS--KFQLQFSFTVCI 278 EV +G SQGI+S S S +F+FTVC+ Sbjct: 345 EVNLGDSQGIISLSGSHCSHPSRFAFTVCV 374