BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033260
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containi...   179   2e-43
ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|2...   162   2e-38
ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containi...   158   5e-37
ref|XP_004167701.1| PREDICTED: pentatricopeptide repeat-containi...   154   6e-36

>ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  179 bits (455), Expect = 2e-43
 Identities = 79/105 (75%), Positives = 95/105 (90%)
 Frame = +3

Query: 3   YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEAENFMRSISINWDVVAWRTLLSACHVH 182
           YLNQLMK+ G+EPG+EHYTCI+GLL +AGR +EAENFM+S  + WDVVAWRTLLSACHVH
Sbjct: 454 YLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVH 513

Query: 183 RNLGLGKQVAEIILKLDPDDVGTYILLSNMYAKARRWDGVANVRK 317
           +N GLGK+VAE++L++DP DVGTYILLSNMYAKA+RWDGV  +RK
Sbjct: 514 QNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRK 558


>ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|222867067|gb|EEF04198.1|
           predicted protein [Populus trichocarpa]
          Length = 707

 Score =  162 bits (411), Expect = 2e-38
 Identities = 71/105 (67%), Positives = 88/105 (83%)
 Frame = +3

Query: 3   YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEAENFMRSISINWDVVAWRTLLSACHVH 182
           YL+ LMK+ GV+PGLEHYTCI+ LL + G+ NEA NFMR+  + WDVVAWRTLL+ACHVH
Sbjct: 458 YLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVH 517

Query: 183 RNLGLGKQVAEIILKLDPDDVGTYILLSNMYAKARRWDGVANVRK 317
           +N GLG+ VAE +L++DP+DVGTY LLSN+YAK +RWDGV  VRK
Sbjct: 518 QNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRK 562


>ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  162 bits (410), Expect = 3e-38
 Identities = 71/105 (67%), Positives = 87/105 (82%)
 Frame = +3

Query: 3   YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEAENFMRSISINWDVVAWRTLLSACHVH 182
           YLN LM+   +EPGLEHYTC++ LL RAG  +EAENFM++  + WDVVAWRTLL+ACHVH
Sbjct: 445 YLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVH 504

Query: 183 RNLGLGKQVAEIILKLDPDDVGTYILLSNMYAKARRWDGVANVRK 317
           RN  LG+++AE +L++DP DVGTY LLSNMYAKARRWDGV  +RK
Sbjct: 505 RNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRK 549


>ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  158 bits (399), Expect = 5e-37
 Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +3

Query: 3   YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEAENFMRSIS-INWDVVAWRTLLSACHV 179
           Y +Q+MK+  VEPGLEHYTC++ LLGRAG  +EAENFM++ + + WDVVAWRTLL+ACH+
Sbjct: 453 YFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHI 512

Query: 180 HRNLGLGKQVAEIILKLDPDDVGTYILLSNMYAKARRWDGVANVRK 317
           HRN  LGKQ+ E ++++DP DVGTY LLSNM+AKAR+WDGV  +RK
Sbjct: 513 HRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRK 558


>ref|XP_004167701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like, partial [Cucumis sativus]
          Length = 390

 Score =  154 bits (390), Expect = 6e-36
 Identities = 69/105 (65%), Positives = 87/105 (82%)
 Frame = +3

Query: 3   YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEAENFMRSISINWDVVAWRTLLSACHVH 182
           Y N LMK+  + PGLEHYTCI+GLL R+GR +EAENFMRS  INWDVV+WRTLL+AC+VH
Sbjct: 141 YFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVH 200

Query: 183 RNLGLGKQVAEIILKLDPDDVGTYILLSNMYAKARRWDGVANVRK 317
           ++   GK++AE +L+L+P DVGTYILLSNM+A+ RRWD V  +RK
Sbjct: 201 KHYDKGKKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRK 245