BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033243
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 75   6e-12
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               73   2e-11
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]    70   2e-10
emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera]    70   2e-10
gb|ACN32036.1| unknown [Zea mays]                                      69   3e-10

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/86 (39%), Positives = 53/86 (61%)
 Frame = -3

Query: 259 TNIANFVPIKLSKDNYLLWKSLFLPILRSNGLTSFIDGTGVCPREILVTGSGESRVDTVN 80
           TN+A  VP KL++ NY+ W+SLF+P+L+   L   ++G  +CP   +   SG       N
Sbjct: 268 TNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRDPSGTC---VPN 324

Query: 79  PEFTEWNKKDQNLLIWLNATISESLL 2
             F  W ++DQ L+IW+N+T+S+ LL
Sbjct: 325 ASFETWCERDQILMIWINSTLSKDLL 350


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/85 (40%), Positives = 53/85 (62%)
 Frame = -3

Query: 256 NIANFVPIKLSKDNYLLWKSLFLPILRSNGLTSFIDGTGVCPREILVTGSGESRVDTVNP 77
           +++NF+ IKL + NY LW +   PIL+S  L  F+DGT +CP   L   +G+   D VNP
Sbjct: 12  SVSNFLTIKLDRTNYPLWLAQITPILKSRKLWGFVDGTNLCPPCFLKDKAGQ-LTDQVNP 70

Query: 76  EFTEWNKKDQNLLIWLNATISESLL 2
           +F  W  +DQ +L W+N +++  +L
Sbjct: 71  DFEPWILQDQMVLSWINGSLTPKVL 95


>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
          Length = 1539

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = -3

Query: 301 SHQSSISLNIMNTSTNIA----NFVPIKLSKDNYLLWKSLFLPILRSNGLTSFIDGTGVC 134
           +H S + L   +TS+ ++    + +PIKL ++NY++WK+    ++ +NG   +IDGT  C
Sbjct: 258 THSSDLHLPSSSTSSLVSLSLNHALPIKLDRNNYIJWKTXMENVVYANGFEEYIDGTKPC 317

Query: 133 PREILVTGSGESRVDTVNPEFTEWNKKDQNLLIWLNATISESLL 2
           P + L TG        +NP+F +W + D+ +L WL +T++  ++
Sbjct: 318 PPQELHTGE-------LNPDFVQWRRFDRMVLSWLYSTLTPDIM 354


>emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera]
          Length = 1047

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = -3

Query: 301 SHQSSISLNIMNTSTNIA----NFVPIKLSKDNYLLWKSLFLPILRSNGLTSFIDGTGVC 134
           +H S + L   +TS+ ++    + +PIKL ++NY+LWK+    ++ +NG   +IDGT  C
Sbjct: 5   THSSDLHLPSSSTSSLVSLSLNHALPIKLDRNNYILWKTQMENVVYANGFEEYIDGTKPC 64

Query: 133 PREILVTGSGESRVDTVNPEFTEWNKKDQNLLIWLNATISESLL 2
           P + L TG        +NP+F +W + D+ +L WL +T++  ++
Sbjct: 65  PPQELHTGE-------LNPDFVQWRRFDRMVLSWLYSTLTPDIM 101


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
 Frame = -3

Query: 250 ANFVPIKLSKDNYLLWKSLFLPILRSNGLTSFIDGTGVCPREILVT----GSGESRVDTV 83
           +  V +KL+ +NYLLW +  LP LRS GL+  IDG+   PR+ +      GSG  R   +
Sbjct: 23  SQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSG-GRTIAI 81

Query: 82  NPEFTEWNKKDQNLLIWLNATISESLL 2
           NPEFT W  +DQ +L  +N+++SE +L
Sbjct: 82  NPEFTSWYHQDQLVLSVINSSLSEEVL 108