BLASTX nr result
ID: Coptis24_contig00033213
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033213 (287 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|2... 112 5e-28 ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methy... 117 9e-28 ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arab... 109 3e-27 ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protei... 109 7e-27 gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transfe... 109 7e-27 >ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa] Length = 210 Score = 112 bits (279), Expect(2) = 5e-28 Identities = 54/75 (72%), Positives = 65/75 (86%) Frame = +2 Query: 2 KSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVLLNAGATVIAIEKDPHMA 181 KSLGQHYMLN IN++LV +A V +GD++LEIGPGTGSLTNVL++AGATV+AIEKD HMA Sbjct: 44 KSLGQHYMLNDEINEQLVASANVEEGDLILEIGPGTGSLTNVLIDAGATVLAIEKDAHMA 103 Query: 182 ALVKERFASLNASRV 226 ALV+ERFA N +V Sbjct: 104 ALVRERFADTNRFKV 118 Score = 37.4 bits (85), Expect(2) = 5e-28 Identities = 16/24 (66%), Positives = 19/24 (79%) Frame = +1 Query: 214 RFSGLQEDFTKCNIRCHMMSSMES 285 RF LQEDF KC+IR HM+S +ES Sbjct: 115 RFKVLQEDFIKCHIRSHMLSMLES 138 >ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera] Length = 335 Score = 117 bits (294), Expect(2) = 9e-28 Identities = 56/75 (74%), Positives = 69/75 (92%) Frame = +2 Query: 2 KSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVLLNAGATVIAIEKDPHMA 181 KSLGQHYMLN++IN++L +TA++RDGDV+LEIGPGTGSLTNVLL+AGATV+AIEKD HMA Sbjct: 65 KSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNVLLDAGATVLAIEKDAHMA 124 Query: 182 ALVKERFASLNASRV 226 ALV+ERFA + +V Sbjct: 125 ALVRERFAVTDRLKV 139 Score = 30.8 bits (68), Expect(2) = 9e-28 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 211 ERFSGLQEDFTKCNIRCHMMSSMES 285 +R LQEDF KC+I H+ S +ES Sbjct: 135 DRLKVLQEDFMKCHIHPHLFSLLES 159 >ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] Length = 342 Score = 109 bits (273), Expect(2) = 3e-27 Identities = 53/75 (70%), Positives = 62/75 (82%) Frame = +2 Query: 2 KSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVLLNAGATVIAIEKDPHMA 181 KSLGQHYMLN+ IND+L A+V++GD VLEIGPGTGSLTNVL+N GATV+AIEKDPHM Sbjct: 72 KSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMV 131 Query: 182 ALVKERFASLNASRV 226 LV ERFA + +V Sbjct: 132 DLVSERFAGSDKFKV 146 Score = 37.0 bits (84), Expect(2) = 3e-27 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +1 Query: 211 ERFSGLQEDFTKCNIRCHMMSSMES 285 ++F LQEDF KC+IR HM+S +ES Sbjct: 142 DKFKVLQEDFVKCHIRSHMLSILES 166 >ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] Length = 343 Score = 109 bits (273), Expect(2) = 7e-27 Identities = 53/75 (70%), Positives = 62/75 (82%) Frame = +2 Query: 2 KSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVLLNAGATVIAIEKDPHMA 181 KSLGQHYMLN+ IND+L A+V++GD VLEIGPGTGSLTNVL+N GATV+AIEKDPHM Sbjct: 73 KSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMV 132 Query: 182 ALVKERFASLNASRV 226 LV ERFA + +V Sbjct: 133 DLVSERFAGSDKFKV 147 Score = 35.8 bits (81), Expect(2) = 7e-27 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +1 Query: 211 ERFSGLQEDFTKCNIRCHMMSSMES 285 ++F LQEDF KC+IR HM+S +E+ Sbjct: 143 DKFKVLQEDFVKCHIRSHMLSILET 167 >gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis thaliana gb|AF051326 and contains a Ribosomal RNA Adenine Dimethylases PF|00398 domain. This gene may be cut off, partial [Arabidopsis thaliana] Length = 239 Score = 109 bits (273), Expect(2) = 7e-27 Identities = 53/75 (70%), Positives = 62/75 (82%) Frame = +2 Query: 2 KSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVLLNAGATVIAIEKDPHMA 181 KSLGQHYMLN+ IND+L A+V++GD VLEIGPGTGSLTNVL+N GATV+AIEKDPHM Sbjct: 73 KSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMV 132 Query: 182 ALVKERFASLNASRV 226 LV ERFA + +V Sbjct: 133 DLVSERFAGSDKFKV 147 Score = 35.8 bits (81), Expect(2) = 7e-27 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +1 Query: 211 ERFSGLQEDFTKCNIRCHMMSSMES 285 ++F LQEDF KC+IR HM+S +E+ Sbjct: 143 DKFKVLQEDFVKCHIRSHMLSILET 167