BLASTX nr result

ID: Coptis24_contig00033182 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033182
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533067.1| conserved hypothetical protein [Ricinus comm...    60   2e-07
ref|XP_002320394.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002302826.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_002533067.1| conserved hypothetical protein [Ricinus communis]
           gi|223527131|gb|EEF29306.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 143

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = -1

Query: 276 IDNCCRWLRNLDDTCVCELLIRLPPFLRAQEHCVTMSVA 160
           +D+CCRWL +LDD C+CELL+RLPPFL    H  T+ +A
Sbjct: 90  VDDCCRWLNDLDDECICELLVRLPPFLARPLHQYTVVIA 128


>ref|XP_002320394.1| predicted protein [Populus trichocarpa] gi|222861167|gb|EEE98709.1|
           predicted protein [Populus trichocarpa]
          Length = 152

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = -1

Query: 273 DNCCRWLRNLDDTCVCELLIRLPPFLRAQEHCVTMSVA 160
           DNCC+WL+ LD+ CVC++L RLPPFL    H  T+ VA
Sbjct: 102 DNCCKWLKELDEECVCDVLYRLPPFLSKPTHTYTVYVA 139


>ref|XP_002302826.1| predicted protein [Populus trichocarpa] gi|222844552|gb|EEE82099.1|
           predicted protein [Populus trichocarpa]
          Length = 139

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = -1

Query: 273 DNCCRWLRNLDDTCVCELLIRLPPFLRAQEHCVTMSV 163
           D CCRWL ++DD CVC+LL+RLPPFL    H  T+ +
Sbjct: 90  DTCCRWLNDVDDECVCQLLVRLPPFLSRTRHEYTIKI 126


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