BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033169
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi...   127   9e-28
ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|XP_002521729.1| pentatricopeptide repeat-containing protein,...   103   1e-20
ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ...    96   4e-18

>ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  127 bits (319), Expect = 9e-28
 Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 3/108 (2%)
 Frame = +3

Query: 15  SPKKHKPCTQSMPNINKSLKLPIF---SKTHLSSLLKFQSRLISSTLVPTHEHISHLILD 185
           S K  +  ++SM NI+K  KL +F   S    SS++  QS+ IS+T VPTH+HI+HLIL+
Sbjct: 44  SRKGVRKASKSMFNISKYAKLIMFCNVSNIGRSSVVNLQSKPISTTPVPTHQHIAHLILE 103

Query: 186 QNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329
           Q S +QALQTFRWAS LPNF HNQ+TYRAL+HKLC FRRF+TVKEVL+
Sbjct: 104 QKSASQALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLD 151


>ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  104 bits (259), Expect = 9e-21
 Identities = 50/94 (53%), Positives = 67/94 (71%)
 Frame = +3

Query: 48  MPNINKSLKLPIFSKTHLSSLLKFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFRWA 227
           M  + K+   P  S TH     +FQ+   SS+  P+ EH+S LILDQ S ++AL+ FRWA
Sbjct: 1   MRKLWKAFAYPTSSPTHFLRRFQFQTHSSSSS-APSQEHVSQLILDQKSASEALEYFRWA 59

Query: 228 SKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329
           S +PNF H+Q+TYRAL+HKLC FRRFDTVK++L+
Sbjct: 60  STVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLD 93


>ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539120|gb|EEF40716.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 629

 Score =  103 bits (257), Expect = 1e-20
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
 Frame = +3

Query: 48  MPNINKSLKLPIFSKTHLSSLLKFQSRLISST---LVPTHEHISHLILDQNSHTQALQTF 218
           MP +   LKL   + + L  + +F+    SST    VP+H+HI+HLILDQNS T+ALQTF
Sbjct: 1   MPKLFPPLKLKA-TASKLLDIFQFRRYSSSSTPSLSVPSHQHIAHLILDQNSATKALQTF 59

Query: 219 RWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329
           +WAS LP FTH+Q+TYRAL+ KLC F RFDTV ++L+
Sbjct: 60  KWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLD 96


>ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 46/64 (71%), Positives = 52/64 (81%)
 Frame = +3

Query: 138 STLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVK 317
           S  VPTHE I HLILDQ S  QALQTF WASKLPNFTH+Q+TYRAL+HKL  FRRF TV+
Sbjct: 9   SLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQ 68

Query: 318 EVLE 329
            +L+
Sbjct: 69  HLLD 72


>ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513709|gb|AES95332.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 41/65 (63%), Positives = 54/65 (83%)
 Frame = +3

Query: 135 SSTLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTV 314
           SS+L PT +H+  LILDQ + ++ALQTFRWAS    FTH+Q+TYR L+HKLC+FRRFDTV
Sbjct: 31  SSSLPPTQDHLCQLILDQKTSSEALQTFRWASTFSKFTHSQSTYRTLIHKLCIFRRFDTV 90

Query: 315 KEVLE 329
           K++L+
Sbjct: 91  KQLLD 95