BLASTX nr result
ID: Coptis24_contig00033169
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033169 (330 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi... 127 9e-28 ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi... 104 9e-21 ref|XP_002521729.1| pentatricopeptide repeat-containing protein,... 103 1e-20 ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2... 98 6e-19 ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ... 96 4e-18 >ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera] Length = 686 Score = 127 bits (319), Expect = 9e-28 Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 3/108 (2%) Frame = +3 Query: 15 SPKKHKPCTQSMPNINKSLKLPIF---SKTHLSSLLKFQSRLISSTLVPTHEHISHLILD 185 S K + ++SM NI+K KL +F S SS++ QS+ IS+T VPTH+HI+HLIL+ Sbjct: 44 SRKGVRKASKSMFNISKYAKLIMFCNVSNIGRSSVVNLQSKPISTTPVPTHQHIAHLILE 103 Query: 186 QNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329 Q S +QALQTFRWAS LPNF HNQ+TYRAL+HKLC FRRF+TVKEVL+ Sbjct: 104 QKSASQALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLD 151 >ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Glycine max] Length = 618 Score = 104 bits (259), Expect = 9e-21 Identities = 50/94 (53%), Positives = 67/94 (71%) Frame = +3 Query: 48 MPNINKSLKLPIFSKTHLSSLLKFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFRWA 227 M + K+ P S TH +FQ+ SS+ P+ EH+S LILDQ S ++AL+ FRWA Sbjct: 1 MRKLWKAFAYPTSSPTHFLRRFQFQTHSSSSS-APSQEHVSQLILDQKSASEALEYFRWA 59 Query: 228 SKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329 S +PNF H+Q+TYRAL+HKLC FRRFDTVK++L+ Sbjct: 60 STVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLD 93 >ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 629 Score = 103 bits (257), Expect = 1e-20 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 3/97 (3%) Frame = +3 Query: 48 MPNINKSLKLPIFSKTHLSSLLKFQSRLISST---LVPTHEHISHLILDQNSHTQALQTF 218 MP + LKL + + L + +F+ SST VP+H+HI+HLILDQNS T+ALQTF Sbjct: 1 MPKLFPPLKLKA-TASKLLDIFQFRRYSSSSTPSLSVPSHQHIAHLILDQNSATKALQTF 59 Query: 219 RWASKLPNFTHNQATYRALVHKLCVFRRFDTVKEVLE 329 +WAS LP FTH+Q+TYRAL+ KLC F RFDTV ++L+ Sbjct: 60 KWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLD 96 >ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa] Length = 584 Score = 98.2 bits (243), Expect = 6e-19 Identities = 46/64 (71%), Positives = 52/64 (81%) Frame = +3 Query: 138 STLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTVK 317 S VPTHE I HLILDQ S QALQTF WASKLPNFTH+Q+TYRAL+HKL FRRF TV+ Sbjct: 9 SLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQ 68 Query: 318 EVLE 329 +L+ Sbjct: 69 HLLD 72 >ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 620 Score = 95.5 bits (236), Expect = 4e-18 Identities = 41/65 (63%), Positives = 54/65 (83%) Frame = +3 Query: 135 SSTLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQATYRALVHKLCVFRRFDTV 314 SS+L PT +H+ LILDQ + ++ALQTFRWAS FTH+Q+TYR L+HKLC+FRRFDTV Sbjct: 31 SSSLPPTQDHLCQLILDQKTSSEALQTFRWASTFSKFTHSQSTYRTLIHKLCIFRRFDTV 90 Query: 315 KEVLE 329 K++L+ Sbjct: 91 KQLLD 95