BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033109
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   280   1e-73
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   270   1e-70
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   264   5e-69
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ...   263   1e-68
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   260   7e-68

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  280 bits (715), Expect = 1e-73
 Identities = 132/152 (86%), Positives = 143/152 (94%)
 Frame = +3

Query: 3   KTLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTI 182
           KT  FF W+K QN+FP+ETIFYNV MKSLRFGRQF +IE+LANEMI   +ELDNITYSTI
Sbjct: 181 KTYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTI 240

Query: 183 ITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW 362
           ITCAKRCN+FDKAV+WFERMYKTGLMPDEVTYSA+LDVYAKLGKVEEVLSLYE+GRASGW
Sbjct: 241 ITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGW 300

Query: 363 KPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKS 458
           KPDPIAF+VLGKMFGEAGDYDGIRYVLQEMKS
Sbjct: 301 KPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKS 332


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score =  270 bits (689), Expect = 1e-70
 Identities = 129/152 (84%), Positives = 137/152 (90%)
 Frame = +3

Query: 3   KTLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTI 182
           K   FF W+K QN FPVETIFYNV MKSLRFGRQF +I+KLANEM+ N IELDNITYSTI
Sbjct: 179 KAHLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTI 238

Query: 183 ITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW 362
           ITCAKRCN FD A+EWFERMYKTGLMPDEVTYSA+LDVYAKLG+VEEVLSLYE+G ASGW
Sbjct: 239 ITCAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGW 298

Query: 363 KPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKS 458
           KPDPI FSVL KMFGEAGDYDGIRYVLQEMKS
Sbjct: 299 KPDPITFSVLAKMFGEAGDYDGIRYVLQEMKS 330


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  264 bits (675), Expect = 5e-69
 Identities = 126/152 (82%), Positives = 137/152 (90%)
 Frame = +3

Query: 3   KTLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTI 182
           KT  FF W+K+QN+FP+ETIFYNV MKSLR+GRQF +IE LANEMI   IELDNITYSTI
Sbjct: 167 KTHLFFNWIKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTI 226

Query: 183 ITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW 362
           ITCAK+C+ FDKA+EWFERMYKTGLMPDEVTYSA+LDVYA LGKVEEVLSLYE+GRASGW
Sbjct: 227 ITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGW 286

Query: 363 KPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKS 458
            PDP  FSVLGKMFGEAGDYDGI YVLQEMKS
Sbjct: 287 TPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKS 318


>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509692|gb|AES90834.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  263 bits (671), Expect = 1e-68
 Identities = 121/152 (79%), Positives = 141/152 (92%)
 Frame = +3

Query: 3   KTLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTI 182
           KT  FF W+K QN+ P+ETIFYNV MKSLRFGRQF +IE+LA++MI+  +ELDNITYSTI
Sbjct: 172 KTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTI 231

Query: 183 ITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW 362
           I+CAK+CN+FDKAV WFERMYKTGLMPDEVT+SA+LDVYA+LGKVEEV++L+E+GRA+GW
Sbjct: 232 ISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGW 291

Query: 363 KPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKS 458
           KPDPI FSVLGKMFGEAGDYDGIRYVLQEMKS
Sbjct: 292 KPDPITFSVLGKMFGEAGDYDGIRYVLQEMKS 323


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score =  260 bits (665), Expect = 7e-68
 Identities = 122/152 (80%), Positives = 140/152 (92%)
 Frame = +3

Query: 3   KTLCFFTWLKNQNVFPVETIFYNVVMKSLRFGRQFVVIEKLANEMIENNIELDNITYSTI 182
           KT  FF W+K++N+FP+ETIFYNV MKSLRFGRQF +IE++A EM+++ +ELDNITYSTI
Sbjct: 168 KTHTFFNWVKSKNLFPMETIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTI 227

Query: 183 ITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGW 362
           ITCAKRCN +DKA+EWFERMYKTGLMPDEVTYSA+LDVY+KL KVEEVLSLYE+  A+GW
Sbjct: 228 ITCAKRCNFYDKAIEWFERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGW 287

Query: 363 KPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKS 458
           KPD IAFSVLGKMFGEAGDYDGIRYVLQEMKS
Sbjct: 288 KPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKS 319