BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033061
         (728 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...   373   e-101
ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containi...   373   e-101
emb|CBI41122.3| unnamed protein product [Vitis vinifera]              373   e-101
emb|CBI23560.3| unnamed protein product [Vitis vinifera]              373   e-101
emb|CBI23556.3| unnamed protein product [Vitis vinifera]              373   e-101

>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
            chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  373 bits (958), Expect = e-101
 Identities = 176/242 (72%), Positives = 211/242 (87%)
 Frame = +1

Query: 1    MYSRCGNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVT 180
            MYSRCGNIEAA+QVF EM+DRNVISWTSMITGFAKHG+A RALE FH+M + G KPNE+T
Sbjct: 481  MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 540

Query: 181  FVAIISACSHVGLVSEGWEHFNSMQKVHNIVPRMEHYACMVDLLGRSGLLKEALEFINSM 360
            +VA++SACSHVG++SEG +HFNSM K H IVPRMEHYACMVDLLGRSGLL EA+EFINSM
Sbjct: 541  YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600

Query: 361  PFKAAALVWRTLLGACRVQGNMELGKLVAKHILDLDPHDPAAYILLSNLYASTGQWDDGL 540
            P  A ALVWRTLLGACRV GN ELG+  A+ IL+ +P DPAAYILLSNL+AS GQW D +
Sbjct: 601  PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 660

Query: 541  KIRKTMKERKLRKEAGCSWIEMESIVHKFYVGDTSHPRSHEIFNKLNQLAGEIKNLGYVP 720
            KIRK+MKER L KEAGCSWIE+E+ VH+F+VG+TSHP++ +I+ +L+QLA +IK +GY+P
Sbjct: 661  KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 720

Query: 721  NT 726
            +T
Sbjct: 721  DT 722



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 40/231 (17%)
 Frame = +1

Query: 1   MYSRCGNIEAAYQVFIEMDD-RNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEV 177
           +YS+CG+ E A  +F  M + R+++SW++M++ FA +    +A+ TF +M + G  PNE 
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 178 TFVAIISACSH------------------------------VGLVSEGWEHFNSMQKVHN 267
            F A+I ACS+                              + +  +G     S  KV +
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 268 IVP--RMEHYACMVDLLGRSGLLKEALEFINSMPFKAAA---LVWRTLLGACRVQGNMEL 432
            +P   +  +  M+    + G  ++A++    M           + ++L AC   G + L
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 249

Query: 433 GKLVAKHILDLD-PHDPAAYILLSNLY---ASTGQWDDGLKIRKTMKERKL 573
           GK +   ++ L    D      L ++Y   A+ G  DD  K+ + M E  +
Sbjct: 250 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300


>ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
            chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  373 bits (958), Expect = e-101
 Identities = 176/242 (72%), Positives = 211/242 (87%)
 Frame = +1

Query: 1    MYSRCGNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVT 180
            MYSRCGNIEAA+QVF EM+DRNVISWTSMITGFAKHG+A RALE FH+M + G KPNE+T
Sbjct: 301  MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 360

Query: 181  FVAIISACSHVGLVSEGWEHFNSMQKVHNIVPRMEHYACMVDLLGRSGLLKEALEFINSM 360
            +VA++SACSHVG++SEG +HFNSM K H IVPRMEHYACMVDLLGRSGLL EA+EFINSM
Sbjct: 361  YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 361  PFKAAALVWRTLLGACRVQGNMELGKLVAKHILDLDPHDPAAYILLSNLYASTGQWDDGL 540
            P  A ALVWRTLLGACRV GN ELG+  A+ IL+ +P DPAAYILLSNL+AS GQW D +
Sbjct: 421  PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 480

Query: 541  KIRKTMKERKLRKEAGCSWIEMESIVHKFYVGDTSHPRSHEIFNKLNQLAGEIKNLGYVP 720
            KIRK+MKER L KEAGCSWIE+E+ VH+F+VG+TSHP++ +I+ +L+QLA +IK +GY+P
Sbjct: 481  KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 540

Query: 721  NT 726
            +T
Sbjct: 541  DT 542



 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 28/67 (41%), Positives = 48/67 (71%)
 Frame = +1

Query: 31  AYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVTFVAIISACSH 210
           AY+VF +M +RN+++WT MIT FA+ G A  A++ F +M  +G  P+  T+ +++SAC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 211 VGLVSEG 231
           +GL++ G
Sbjct: 64  LGLLALG 70



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
 Frame = +1

Query: 1   MYSRC---GNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGR-ALETFHEMRKAGIKP 168
           MY++C   G+++ + +VF +M + NV+SWT++IT +A+ G   + A+E F +M    I+P
Sbjct: 95  MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 154

Query: 169 NEVTFVAIISACSHV 213
           N  +F +++ AC ++
Sbjct: 155 NHFSFSSVLKACGNL 169


>emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  373 bits (958), Expect = e-101
 Identities = 176/242 (72%), Positives = 211/242 (87%)
 Frame = +1

Query: 1    MYSRCGNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVT 180
            MYSRCGNIEAA+QVF EM+DRNVISWTSMITGFAKHG+A RALE FH+M + G KPNE+T
Sbjct: 306  MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 365

Query: 181  FVAIISACSHVGLVSEGWEHFNSMQKVHNIVPRMEHYACMVDLLGRSGLLKEALEFINSM 360
            +VA++SACSHVG++SEG +HFNSM K H IVPRMEHYACMVDLLGRSGLL EA+EFINSM
Sbjct: 366  YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 361  PFKAAALVWRTLLGACRVQGNMELGKLVAKHILDLDPHDPAAYILLSNLYASTGQWDDGL 540
            P  A ALVWRTLLGACRV GN ELG+  A+ IL+ +P DPAAYILLSNL+AS GQW D +
Sbjct: 426  PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 485

Query: 541  KIRKTMKERKLRKEAGCSWIEMESIVHKFYVGDTSHPRSHEIFNKLNQLAGEIKNLGYVP 720
            KIRK+MKER L KEAGCSWIE+E+ VH+F+VG+TSHP++ +I+ +L+QLA +IK +GY+P
Sbjct: 486  KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 545

Query: 721  NT 726
            +T
Sbjct: 546  DT 547



 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 28/67 (41%), Positives = 48/67 (71%)
 Frame = +1

Query: 31  AYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVTFVAIISACSH 210
           AY+VF +M +RN+++WT MIT FA+ G A  A++ F +M  +G  P+  T+ +++SAC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 211 VGLVSEG 231
           +GL++ G
Sbjct: 69  LGLLALG 75



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
 Frame = +1

Query: 1   MYSRC---GNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGR-ALETFHEMRKAGIKP 168
           MY++C   G+++ + +VF +M + NV+SWT++IT +A+ G   + A+E F +M    I+P
Sbjct: 100 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 159

Query: 169 NEVTFVAIISACSHV 213
           N  +F +++ AC ++
Sbjct: 160 NHFSFSSVLKACGNL 174


>emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  373 bits (958), Expect = e-101
 Identities = 176/242 (72%), Positives = 211/242 (87%)
 Frame = +1

Query: 1   MYSRCGNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVT 180
           MYSRCGNIEAA+QVF EM+DRNVISWTSMITGFAKHG+A RALE FH+M + G KPNE+T
Sbjct: 169 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 228

Query: 181 FVAIISACSHVGLVSEGWEHFNSMQKVHNIVPRMEHYACMVDLLGRSGLLKEALEFINSM 360
           +VA++SACSHVG++SEG +HFNSM K H IVPRMEHYACMVDLLGRSGLL EA+EFINSM
Sbjct: 229 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 288

Query: 361 PFKAAALVWRTLLGACRVQGNMELGKLVAKHILDLDPHDPAAYILLSNLYASTGQWDDGL 540
           P  A ALVWRTLLGACRV GN ELG+  A+ IL+ +P DPAAYILLSNL+AS GQW D +
Sbjct: 289 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 348

Query: 541 KIRKTMKERKLRKEAGCSWIEMESIVHKFYVGDTSHPRSHEIFNKLNQLAGEIKNLGYVP 720
           KIRK+MKER L KEAGCSWIE+E+ VH+F+VG+TSHP++ +I+ +L+QLA +IK +GY+P
Sbjct: 349 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 408

Query: 721 NT 726
           +T
Sbjct: 409 DT 410


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  373 bits (958), Expect = e-101
 Identities = 176/242 (72%), Positives = 211/242 (87%)
 Frame = +1

Query: 1    MYSRCGNIEAAYQVFIEMDDRNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEVT 180
            MYSRCGNIEAA+QVF EM+DRNVISWTSMITGFAKHG+A RALE FH+M + G KPNE+T
Sbjct: 499  MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 558

Query: 181  FVAIISACSHVGLVSEGWEHFNSMQKVHNIVPRMEHYACMVDLLGRSGLLKEALEFINSM 360
            +VA++SACSHVG++SEG +HFNSM K H IVPRMEHYACMVDLLGRSGLL EA+EFINSM
Sbjct: 559  YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 618

Query: 361  PFKAAALVWRTLLGACRVQGNMELGKLVAKHILDLDPHDPAAYILLSNLYASTGQWDDGL 540
            P  A ALVWRTLLGACRV GN ELG+  A+ IL+ +P DPAAYILLSNL+AS GQW D +
Sbjct: 619  PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 678

Query: 541  KIRKTMKERKLRKEAGCSWIEMESIVHKFYVGDTSHPRSHEIFNKLNQLAGEIKNLGYVP 720
            KIRK+MKER L KEAGCSWIE+E+ VH+F+VG+TSHP++ +I+ +L+QLA +IK +GY+P
Sbjct: 679  KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 738

Query: 721  NT 726
            +T
Sbjct: 739  DT 740



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 40/231 (17%)
 Frame = +1

Query: 1   MYSRCGNIEAAYQVFIEMDD-RNVISWTSMITGFAKHGYAGRALETFHEMRKAGIKPNEV 177
           +YS+CG+ E A  +F  M + R+++SW++M++ FA +    +A+ TF +M + G  PNE 
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 178 TFVAIISACSH------------------------------VGLVSEGWEHFNSMQKVHN 267
            F A+I ACS+                              + +  +G     S  KV +
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 268 IVP--RMEHYACMVDLLGRSGLLKEALEFINSMPFKAAA---LVWRTLLGACRVQGNMEL 432
            +P   +  +  M+    + G  ++A++    M           + ++L AC   G + L
Sbjct: 208 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 267

Query: 433 GKLVAKHILDLD-PHDPAAYILLSNLY---ASTGQWDDGLKIRKTMKERKL 573
           GK +   ++ L    D      L ++Y   A+ G  DD  K+ + M E  +
Sbjct: 268 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318