BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033031
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    77   1e-12
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    77   1e-12
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    77   1e-12
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    76   2e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    75   7e-12

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/117 (35%), Positives = 63/117 (53%)
 Frame = -2

Query: 354 LLRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYE 175
           + RQ+SR  +  EGDRN+A+FH     R   + + E++++DG+    Q+ IK+    FYE
Sbjct: 351 MARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYE 410

Query: 174 AKYQDTPVTHDLELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4
             +   P     E+L  IP  + D  N  L +    EEI+  +F M +  +PGPDGF
Sbjct: 411 NLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/117 (35%), Positives = 63/117 (53%)
 Frame = -2

Query: 354 LLRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYE 175
           + RQ+SR  +  EGDRN+A+FH     R   + + E++++DG+    Q+ IK+    FYE
Sbjct: 308 MARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYE 367

Query: 174 AKYQDTPVTHDLELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4
             +   P     E+L  IP  + D  N  L +    EEI+  +F M +  +PGPDGF
Sbjct: 368 NLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
 Frame = -2

Query: 315 GDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEAKYQDTPVTHD-- 142
           GDRN+  FH     R   + + EI+  DG ++T Q  I+   +++++   Q  P  ++  
Sbjct: 90  GDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGM 149

Query: 141 --LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4
              EL +++P    ++D+  LTR++  EEI+K +FSM  D SPGPDG+
Sbjct: 150 CVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGY 197


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
 Frame = -2

Query: 351  LRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEA 172
            L++KS+  + + GD+N+  FH     R   + ++EI  +DG++  K D+IK +   F+  
Sbjct: 765  LKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAERFFRE 824

Query: 171  KYQDTPVTHD----LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4
              Q  P  ++     +L  ++P    + ++  LTR++  EEI+K +FSM  D SPGPDGF
Sbjct: 825  FLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGF 884


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
 Frame = -2

Query: 351 LRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEA 172
           L+QKS+  + + GD+N+  FH     R   + + EI+  DG + TK D+IK     F+  
Sbjct: 357 LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFRE 416

Query: 171 KYQDTPVTHD----LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4
             Q  P   +     EL  ++P    D D   L R +  EEI+K +F M +D SPGPDG+
Sbjct: 417 FLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGY 476