BLASTX nr result
ID: Coptis24_contig00033031
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00033031 (364 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 77 1e-12 gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 77 1e-12 gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 77 1e-12 gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 76 2e-12 dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 75 7e-12 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 77.4 bits (189), Expect = 1e-12 Identities = 41/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 354 LLRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYE 175 + RQ+SR + EGDRN+A+FH R + + E++++DG+ Q+ IK+ FYE Sbjct: 351 MARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYE 410 Query: 174 AKYQDTPVTHDLELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4 + P E+L IP + D N L + EEI+ +F M + +PGPDGF Sbjct: 411 NLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467 >gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical protein OsJ_32156 [Oryza sativa Japonica Group] Length = 1339 Score = 77.4 bits (189), Expect = 1e-12 Identities = 41/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 354 LLRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYE 175 + RQ+SR + EGDRN+A+FH R + + E++++DG+ Q+ IK+ FYE Sbjct: 308 MARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYE 367 Query: 174 AKYQDTPVTHDLELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4 + P E+L IP + D N L + EEI+ +F M + +PGPDGF Sbjct: 368 NLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424 >gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1216 Score = 77.4 bits (189), Expect = 1e-12 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Frame = -2 Query: 315 GDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEAKYQDTPVTHD-- 142 GDRN+ FH R + + EI+ DG ++T Q I+ +++++ Q P ++ Sbjct: 90 GDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGM 149 Query: 141 --LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4 EL +++P ++D+ LTR++ EEI+K +FSM D SPGPDG+ Sbjct: 150 CVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGY 197 >gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1447 Score = 76.3 bits (186), Expect = 2e-12 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Frame = -2 Query: 351 LRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEA 172 L++KS+ + + GD+N+ FH R + ++EI +DG++ K D+IK + F+ Sbjct: 765 LKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAERFFRE 824 Query: 171 KYQDTPVTHD----LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4 Q P ++ +L ++P + ++ LTR++ EEI+K +FSM D SPGPDGF Sbjct: 825 FLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGF 884 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 74.7 bits (182), Expect = 7e-12 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Frame = -2 Query: 351 LRQKSRTKFDEEGDRNSAYFHNMCKIRLGASMMTEIMKEDGTLLTKQDQIKQHVISFYEA 172 L+QKS+ + + GD+N+ FH R + + EI+ DG + TK D+IK F+ Sbjct: 357 LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFRE 416 Query: 171 KYQDTPVTHD----LELLSIIPKLIDDEDNYFLTRIINYEEIQKTVFSMKADSSPGPDGF 4 Q P + EL ++P D D L R + EEI+K +F M +D SPGPDG+ Sbjct: 417 FLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGY 476