BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00033012
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat...   120   2e-34
ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containi...   117   5e-34
ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containi...   117   5e-34
emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]   120   3e-33
ref|XP_002530608.1| pentatricopeptide repeat-containing protein,...   110   5e-31

>ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  120 bits (301), Expect(2) = 2e-34
 Identities = 52/58 (89%), Positives = 57/58 (98%)
 Frame = +3

Query: 111 NRCGDAGNLGYRFFAWASKQPGYRHSYQVYKSMVKILGKMRQFGAVWALIDEMRKENP 284
           NRCGDAGNLGYRFF WASKQPGYRHSY+VYK+M+KILGKMRQFGAVWALI+EMR+ENP
Sbjct: 96  NRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENP 153



 Score = 50.4 bits (119), Expect(2) = 2e-34
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   EKLYRILRKFHTRAPKLELALQESGVS 82
           EK+YRILRKFH+R PKLELALQESGV+
Sbjct: 59  EKVYRILRKFHSRVPKLELALQESGVA 85


>ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  117 bits (294), Expect(2) = 5e-34
 Identities = 51/58 (87%), Positives = 56/58 (96%)
 Frame = +3

Query: 111 NRCGDAGNLGYRFFAWASKQPGYRHSYQVYKSMVKILGKMRQFGAVWALIDEMRKENP 284
           +RCGDAGNLGYRFF WASKQPGYRHSY+VYK+M+K LGKMRQFGAVWALI+EMRKENP
Sbjct: 138 SRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENP 195



 Score = 51.6 bits (122), Expect(2) = 5e-34
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   EKLYRILRKFHTRAPKLELALQESGV 79
           EK+YRILRKFHTR PKLELALQESGV
Sbjct: 101 EKVYRILRKFHTRVPKLELALQESGV 126


>ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  117 bits (294), Expect(2) = 5e-34
 Identities = 51/58 (87%), Positives = 56/58 (96%)
 Frame = +3

Query: 111 NRCGDAGNLGYRFFAWASKQPGYRHSYQVYKSMVKILGKMRQFGAVWALIDEMRKENP 284
           +RCGDAGNLGYRFF WASKQPGYRHSY+VYK+M+K LGKMRQFGAVWALI+EMRKENP
Sbjct: 115 SRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENP 172



 Score = 51.6 bits (122), Expect(2) = 5e-34
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   EKLYRILRKFHTRAPKLELALQESGV 79
           EK+YRILRKFHTR PKLELALQESGV
Sbjct: 78  EKVYRILRKFHTRVPKLELALQESGV 103


>emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  120 bits (301), Expect(2) = 3e-33
 Identities = 52/58 (89%), Positives = 57/58 (98%)
 Frame = +3

Query: 111 NRCGDAGNLGYRFFAWASKQPGYRHSYQVYKSMVKILGKMRQFGAVWALIDEMRKENP 284
           NRCGDAGNLGYRFF WASKQPGYRHSY+VYK+M+KILGKMRQFGAVWALI+EMR+ENP
Sbjct: 129 NRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENP 186



 Score = 46.6 bits (109), Expect(2) = 3e-33
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +2

Query: 8   LYRILRKFHTRAPKLELALQESGVS 82
           +YRILRKFH+R PKLELALQESGV+
Sbjct: 94  VYRILRKFHSRVPKLELALQESGVA 118


>ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529856|gb|EEF31788.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 596

 Score =  110 bits (276), Expect(2) = 5e-31
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +3

Query: 111 NRCGDAGNLGYRFFAWASKQPGYRHSYQVYKSMVKILGKMRQFGAVWALIDEMRKEN 281
           NRCGDAGNLGYRFF WASKQPGYRHSY+ YK+MVKI  KMRQFGAVWAL++EMRK+N
Sbjct: 114 NRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDN 170



 Score = 48.5 bits (114), Expect(2) = 5e-31
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   EKLYRILRKFHTRAPKLELALQESGVS 82
           EK+YRILR FH+R PKLELALQESGV+
Sbjct: 77  EKVYRILRNFHSRVPKLELALQESGVT 103