BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032962
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   165   3e-39
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   157   6e-37
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   156   1e-36
ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|2...   154   5e-36
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   150   8e-35

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  165 bits (418), Expect = 3e-39
 Identities = 81/110 (73%), Positives = 94/110 (85%)
 Frame = +3

Query: 3   VNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIYDYPEPPRLVHRLDR 182
           +N++ ++ L+KDP IIV+NKP G+PVQGGIGIK SLD LAAT L YD  EPPRLVHRLDR
Sbjct: 179 INFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDR 238

Query: 183 DSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVM 332
           DSSGIL++GRTQTSA ILHS+FREKTFGAS +D D  KRILQR YWALV+
Sbjct: 239 DSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVI 288


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  157 bits (398), Expect = 6e-37
 Identities = 78/109 (71%), Positives = 88/109 (80%)
 Frame = +3

Query: 6   NYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIYDYPEPPRLVHRLDRD 185
           N++R + L+KD  IIV+NKP GMPVQGGIGIK S D LAA+ L YDY EPPRLVHRLDRD
Sbjct: 241 NFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRD 300

Query: 186 SSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVM 332
           SSGILV+GRTQTS  +LHSVFREKTF AS  D    +RILQR YWALV+
Sbjct: 301 SSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVI 349


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
           gi|355501934|gb|AES83137.1| RNA pseudourine synthase
           [Medicago truncatula]
          Length = 430

 Score =  156 bits (395), Expect = 1e-36
 Identities = 74/110 (67%), Positives = 93/110 (84%)
 Frame = +3

Query: 3   VNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIYDYPEPPRLVHRLDR 182
           +N++RS++++KDP I+V+NKP GMPVQGGI IK SLD +AA SL YDY +PPRLVHRLDR
Sbjct: 132 INFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDR 191

Query: 183 DSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVM 332
           D SGILV+GRT+TS A+LHS+FREKT  AS +++D  K ILQR YWALV+
Sbjct: 192 DCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVL 241


>ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|222850284|gb|EEE87831.1|
           predicted protein [Populus trichocarpa]
          Length = 324

 Score =  154 bits (390), Expect = 5e-36
 Identities = 75/110 (68%), Positives = 89/110 (80%)
 Frame = +3

Query: 3   VNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIYDYPEPPRLVHRLDR 182
           +N++R + L+KD  IIV+NKP GMPVQGGIGIK SLD L+A+    DY EPPRLVHRLDR
Sbjct: 30  INFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDR 89

Query: 183 DSSGILVLGRTQTSAAILHSVFREKTFGASVDDSDNTKRILQRSYWALVM 332
           D SGILV+GRTQTSA +LH++FREKT  AS DD  N +RILQR YWALV+
Sbjct: 90  DCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVI 139


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  150 bits (380), Expect = 8e-35
 Identities = 74/110 (67%), Positives = 90/110 (81%), Gaps = 2/110 (1%)
 Frame = +3

Query: 9   YMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIYDYPEPPRLVHRLDRDS 188
           +M S++LHKDP I+VINKP G+PVQGGIG+K SLD LAA+ L Y Y EPPRLVHRLDRDS
Sbjct: 182 FMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDS 241

Query: 189 SGILVLGRTQTSAAILHSVFREKTFGAS--VDDSDNTKRILQRSYWALVM 332
           SGIL++GRT TS ++LHSVFREKTF AS   +  D+ K+IL + YWALV+
Sbjct: 242 SGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVI 291