BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032589
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    67   2e-09
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    66   3e-09
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   63   2e-08
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    62   6e-08
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    62   6e-08

>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/115 (29%), Positives = 61/115 (53%)
 Frame = -3

Query: 345  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 166
            +D+++F  G   S+  +  I  +F+  +               ++ +    ++       
Sbjct: 960  DDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDS 1019

Query: 165  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHPERLQLIIPVLA 1
             S P++YLGLPL+  R++  DCLPL+EK  ++I +WKNRFL +  RLQL+  V++
Sbjct: 1020 GSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVIS 1074


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/115 (33%), Positives = 60/115 (52%)
 Frame = -3

Query: 345  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 166
            +D+++F  G   SI     I ++F+  +               ++ +  T ++Q    + 
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFEL 911

Query: 165  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHPERLQLIIPVLA 1
             + P+KYLGLPL+  R++  D LPLVEK   +I +W NRFL    RLQLI  VL+
Sbjct: 912  GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLS 966


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/114 (30%), Positives = 59/114 (51%)
 Frame = -3

Query: 345 NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 166
           +D++IF  G   S++ +K  LD FSRA+               L   +++ L  +IG   
Sbjct: 152 DDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLCAVIGFTR 211

Query: 165 ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHPERLQLIIPVL 4
              P++YLG+ L   R++  D  PL+++   KI +W  R+L +  RLQL+  V+
Sbjct: 212 GYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYAGRLQLVGTVI 265


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 37/114 (32%), Positives = 55/114 (48%)
 Frame = -3

Query: 345 NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 166
           +D++I   G+  SI  +  +L EF++ +               +       +VQ      
Sbjct: 593 DDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDV 652

Query: 165 ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHPERLQLIIPVL 4
              P++YLGLPLV  R++  DCLPL+E+   KIE W +RFL    RL LI   L
Sbjct: 653 GKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTL 706


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/114 (30%), Positives = 57/114 (50%)
 Frame = -3

Query: 345  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 166
            +D+++   G+  SI  +  + DEF++ +               L+      +        
Sbjct: 705  DDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSS 764

Query: 165  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHPERLQLIIPVL 4
               P++YLGLPL+  R+ST DCLPL+E+   +I +W +RFL +  RL LI  VL
Sbjct: 765  GQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVL 818