BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032488
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515231.1| pentatricopeptide repeat-containing protein,...   264   6e-69
ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat...   260   9e-68
ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat...   255   3e-66
ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat...   255   3e-66
ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|2...   255   3e-66

>ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545711|gb|EEF47215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score =  264 bits (675), Expect = 6e-69
 Identities = 127/182 (69%), Positives = 154/182 (84%)
 Frame = -2

Query: 546 GRNRKFDQMWEVLVEMRKKDKSLITTRTLQVVLARVAKVCSVRKTVESFRRFRKMVLVYD 367
           GR+RKFD +W+VL++M++KD+ LI+ RT+Q+VLARVAK+CSVR+TVESFR+F+K V V D
Sbjct: 116 GRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRKFKKFVSVLD 175

Query: 366 TSCYNGLLRTLCQEKSMSDARNVYHCLKKDFKPNLQTFNILLCGWKSSXXXXXXXXXXXX 187
           T+C+N LLRTLCQEKSM+DARNVYH LKK+FKPNLQTFNILL GWK S            
Sbjct: 176 TTCFNALLRTLCQEKSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQSEEAELFFEEMRE 235

Query: 186 XGVKPDVVSYNCLVDVYCKNREIDKALKVVEKMRDGGMTPDVYTYTSIIGGLGLVGQPDK 7
            G+KPDVVSYN L+DVYCK+RE++KA KVVEKMR+  ++PDV TYTSIIGGLGLVGQPDK
Sbjct: 236 LGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDK 295

Query: 6   AR 1
           AR
Sbjct: 296 AR 297


>ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  260 bits (665), Expect = 9e-68
 Identities = 123/182 (67%), Positives = 155/182 (85%)
 Frame = -2

Query: 546 GRNRKFDQMWEVLVEMRKKDKSLITTRTLQVVLARVAKVCSVRKTVESFRRFRKMVLVYD 367
           GR+R+FDQ+WE+LV+MR+KD+SLI+ R++QVVL R+AKVCSV++TVESFR+F+K+V  +D
Sbjct: 137 GRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIAKVCSVKQTVESFRKFKKLVPEFD 196

Query: 366 TSCYNGLLRTLCQEKSMSDARNVYHCLKKDFKPNLQTFNILLCGWKSSXXXXXXXXXXXX 187
           T+C+N LLRTLCQEKSM DARNVYH LK DF+P+L+TFNILL GWKS+            
Sbjct: 197 TACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNILLSGWKSAEEAEGFFDEMRE 256

Query: 186 XGVKPDVVSYNCLVDVYCKNREIDKALKVVEKMRDGGMTPDVYTYTSIIGGLGLVGQPDK 7
            GV+PDVVSYNCL+DVYCK REI++A KV++KMRD  ++PDV +YTSIIGGLGLVGQPDK
Sbjct: 257 MGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDK 316

Query: 6   AR 1
           AR
Sbjct: 317 AR 318


>ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  255 bits (652), Expect = 3e-66
 Identities = 127/182 (69%), Positives = 147/182 (80%)
 Frame = -2

Query: 546 GRNRKFDQMWEVLVEMRKKDKSLITTRTLQVVLARVAKVCSVRKTVESFRRFRKMVLVYD 367
           GR+RKFD++W+VL++++ KD SLI+ RT+ VVL R+AKVCSVR+TVESFR+F+K V  +D
Sbjct: 119 GRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFD 178

Query: 366 TSCYNGLLRTLCQEKSMSDARNVYHCLKKDFKPNLQTFNILLCGWKSSXXXXXXXXXXXX 187
            +C+N LLRTLCQEKSM DARNVYH LK  F+PNLQTFNILL GWKSS            
Sbjct: 179 VTCFNALLRTLCQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSSEEAEGFFDEMIE 238

Query: 186 XGVKPDVVSYNCLVDVYCKNREIDKALKVVEKMRDGGMTPDVYTYTSIIGGLGLVGQPDK 7
            GVKPDVVSYNCLVDVYCKNRE+DKA KVV KMRD  +  DV TYTSIIGGLGLVGQPDK
Sbjct: 239 MGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDK 298

Query: 6   AR 1
           AR
Sbjct: 299 AR 300


>ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  255 bits (652), Expect = 3e-66
 Identities = 127/182 (69%), Positives = 147/182 (80%)
 Frame = -2

Query: 546 GRNRKFDQMWEVLVEMRKKDKSLITTRTLQVVLARVAKVCSVRKTVESFRRFRKMVLVYD 367
           GR+RKFD++W+VL++++ KD SLI+ RT+ VVL R+AKVCSVR+TVESFR+F+K V  +D
Sbjct: 119 GRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFD 178

Query: 366 TSCYNGLLRTLCQEKSMSDARNVYHCLKKDFKPNLQTFNILLCGWKSSXXXXXXXXXXXX 187
            +C+N LLRTLCQEKSM DARNVYH LK  F+PNLQTFNILL GWKSS            
Sbjct: 179 VTCFNALLRTLCQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSSEEAEGFFDEMIE 238

Query: 186 XGVKPDVVSYNCLVDVYCKNREIDKALKVVEKMRDGGMTPDVYTYTSIIGGLGLVGQPDK 7
            GVKPDVVSYNCLVDVYCKNRE+DKA KVV KMRD  +  DV TYTSIIGGLGLVGQPDK
Sbjct: 239 MGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDK 298

Query: 6   AR 1
           AR
Sbjct: 299 AR 300


>ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|222852942|gb|EEE90489.1|
           predicted protein [Populus trichocarpa]
          Length = 507

 Score =  255 bits (652), Expect = 3e-66
 Identities = 124/182 (68%), Positives = 150/182 (82%)
 Frame = -2

Query: 546 GRNRKFDQMWEVLVEMRKKDKSLITTRTLQVVLARVAKVCSVRKTVESFRRFRKMVLVYD 367
           GR+RKFD +W+VL+++++KD++LIT RTLQVVL RVAKVCSVR TVESF +F+++V V+D
Sbjct: 120 GRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLVPVFD 179

Query: 366 TSCYNGLLRTLCQEKSMSDARNVYHCLKKDFKPNLQTFNILLCGWKSSXXXXXXXXXXXX 187
           TSC+N LLRTLCQEKSMSDARNVYH LKK F+PNLQTFNILL GWKSS            
Sbjct: 180 TSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSSEEAELFYEEMKE 239

Query: 186 XGVKPDVVSYNCLVDVYCKNREIDKALKVVEKMRDGGMTPDVYTYTSIIGGLGLVGQPDK 7
            GVKPD+V+YN L+DV+CK RE++KA  VV +MR+  + PDV TYTSIIGGLGLVGQPDK
Sbjct: 240 LGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDK 299

Query: 6   AR 1
           AR
Sbjct: 300 AR 301