BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032474
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula] g...    60   2e-19
ref|XP_002535311.1| conserved hypothetical protein [Ricinus comm...    49   6e-10
ref|XP_002535312.1| 60S ribosomal protein L16, putative [Ricinus...    62   5e-08
gb|ABA99235.1| Mitochondrial ribosomal protein S3, putative, exp...    62   6e-08
gb|ABA99284.1| Mitochondrial ribosomal protein S3, putative [Ory...    62   6e-08

>ref|XP_003588306.1| Ribosomal protein S3 [Medicago truncatula]
           gi|355477354|gb|AES58557.1| Ribosomal protein S3
           [Medicago truncatula]
          Length = 306

 Score = 60.5 bits (145), Expect(2) = 2e-19
 Identities = 29/34 (85%), Positives = 29/34 (85%)
 Frame = -1

Query: 234 MGQRIKRFYFVPRDPPQVGFASRVMGYYPARFGE 133
           MGQRIKRF FV RD PQVGF SRVMG YPARFGE
Sbjct: 1   MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGE 34



 Score = 59.7 bits (143), Expect(2) = 2e-19
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = -2

Query: 92  SGSSHGGVTIDSIYYYGKSVYQDVNLRSFF 3
           SG SHGGVTIDSIYYYGK VYQDVNLRS+F
Sbjct: 35  SGYSHGGVTIDSIYYYGKLVYQDVNLRSYF 64


>ref|XP_002535311.1| conserved hypothetical protein [Ricinus communis]
           gi|223523476|gb|EEF27072.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 63

 Score = 48.5 bits (114), Expect(2) = 6e-10
 Identities = 23/30 (76%), Positives = 26/30 (86%), Gaps = 2/30 (6%)
 Frame = +1

Query: 346 LRWSS--LIFPNVQSCSGLRKEHRPSALNE 429
           +RWSS  + FPNV+SCSGLRKEHRPS LNE
Sbjct: 34  VRWSSRSVGFPNVKSCSGLRKEHRPSTLNE 63



 Score = 40.0 bits (92), Expect(2) = 6e-10
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +3

Query: 243 MLLPADQAATLLVIGVSGKPLTFGSDK*SPLGRFAQM 353
           MLLPA  AA      +S KPL+FGSDK SP GRFAQ+
Sbjct: 1   MLLPASDAAR---DRLSFKPLSFGSDKSSPFGRFAQV 34


>ref|XP_002535312.1| 60S ribosomal protein L16, putative [Ricinus communis]
           gi|223523477|gb|EEF27073.1| 60S ribosomal protein L16,
           putative [Ricinus communis]
          Length = 668

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = -2

Query: 92  SGSSHGGVTIDSIYYYGKSVYQDVNLRSFF 3
           SGS HGGVTIDSIYYYGKSVYQDVNLRS+F
Sbjct: 11  SGSFHGGVTIDSIYYYGKSVYQDVNLRSYF 40


>gb|ABA99235.1| Mitochondrial ribosomal protein S3, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 748

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = -2

Query: 128 CSLRW*M*APLSSGSSHGGVTIDSIYYYGKSVYQDVNLRSFF 3
           C+  W       SGSSHG VTIDSIYYYGKS+YQDVNLRS+F
Sbjct: 16  CAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYF 57


>gb|ABA99284.1| Mitochondrial ribosomal protein S3, putative [Oryza sativa Japonica
           Group]
          Length = 752

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = -2

Query: 128 CSLRW*M*APLSSGSSHGGVTIDSIYYYGKSVYQDVNLRSFF 3
           C+  W       SGSSHG VTIDSIYYYGKS+YQDVNLRS+F
Sbjct: 16  CAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYF 57