BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032468
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g...   106   2e-21
ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g...   106   2e-21
ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g...   103   2e-20
emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]   103   2e-20
ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus ...   100   9e-20

>ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
           sativus]
          Length = 643

 Score =  106 bits (265), Expect = 2e-21
 Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 19/157 (12%)
 Frame = -2

Query: 435 NPSSTNKRRCRQP------NHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEV 274
           N SS +KR  + P       HVAFR+LCH S+ G VIGKSG ++K ++Q TG +I+++E 
Sbjct: 37  NGSSKSKRSKQPPPLIIPPGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEA 96

Query: 273 IHGCQERVIHIFSSELPKKTITLKKD--FKGEENEVTSAQHGLIRVLERVLEVFPTINN- 103
                +RV+ +  S      + L+++    GEE E + AQ GL++V ER+LEV   I   
Sbjct: 97  PSESPDRVVTVIGSPALTSRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGV 156

Query: 102 ----------CRLLADTSQIGYMIGKSGSRIKSIEKD 22
                     CRLLAD +Q+G +IGK G  ++ I K+
Sbjct: 157 EVGAEVGVVYCRLLADVAQVGSVIGKGGKVVEKIRKE 193



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
 Frame = -2

Query: 390 VAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVIHGCQERVIHIFSSELPKKTI 211
           V F++LC   + G VIGK G+IV+ ++ E+GA + +   + GC ER+I I +SE      
Sbjct: 309 VVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASE------ 362

Query: 210 TLKKDFKGEENEVTSAQHGLIRVLERVLEV------------FPTINNCRLLADTSQIGY 67
                    E+  + AQ  ++ V  R ++V             P +   RL+  ++Q+G 
Sbjct: 363 -------NIESRYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVV--ARLVVPSNQVGC 413

Query: 66  MIGKSGSRIKSIEK 25
           ++GK G  I  I K
Sbjct: 414 VLGKGGVIISEIRK 427


>ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
           sativus]
          Length = 658

 Score =  106 bits (265), Expect = 2e-21
 Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 19/157 (12%)
 Frame = -2

Query: 435 NPSSTNKRRCRQP------NHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEV 274
           N SS +KR  + P       HVAFR+LCH S+ G VIGKSG ++K ++Q TG +I+++E 
Sbjct: 32  NGSSKSKRSKQPPPLIIPPGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEA 91

Query: 273 IHGCQERVIHIFSSELPKKTITLKKD--FKGEENEVTSAQHGLIRVLERVLEVFPTINN- 103
                +RV+ +  S      + L+++    GEE E + AQ GL++V ER+LEV   I   
Sbjct: 92  PSESPDRVVTVIGSPALTSRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGV 151

Query: 102 ----------CRLLADTSQIGYMIGKSGSRIKSIEKD 22
                     CRLLAD +Q+G +IGK G  ++ I K+
Sbjct: 152 EVGAEVGVVYCRLLADVAQVGSVIGKGGKVVEKIRKE 188



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
 Frame = -2

Query: 390 VAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVIHGCQERVIHIFSSELPKKTI 211
           V F++LC   + G VIGK G+IV+ ++ E+GA + +   + GC ER+I I +SE      
Sbjct: 304 VVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASE------ 357

Query: 210 TLKKDFKGEENEVTSAQHGLIRVLERVLEV------------FPTINNCRLLADTSQIGY 67
                    E+  + AQ  ++ V  R ++V             P +   RL+  ++Q+G 
Sbjct: 358 -------NIESRYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVV--ARLVVPSNQVGC 408

Query: 66  MIGKSGSRIKSIEK 25
           ++GK G  I  I K
Sbjct: 409 VLGKGGVIISEIRK 422


>ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
           vinifera]
          Length = 648

 Score =  103 bits (256), Expect = 2e-20
 Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 15/152 (9%)
 Frame = -2

Query: 432 PSSTNKRRCRQP-------NHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEV 274
           P+ ++KR    P        HVAFRLLCH S+ G VIGKSG IVK ++ +TGARI++++ 
Sbjct: 30  PNGSSKRSKPPPPPIPVPAGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDS 89

Query: 273 IHGCQERVIHIFSSELPKKTITLKKDFKGEENEVTSAQHGLIRVLERVLEVFPTIN---- 106
                 RVI + +     + I L+     EE E ++AQ  ++RV ER+LEV   ++    
Sbjct: 90  PSTSDHRVILVIAPASVNRRIALQG--SSEEVEASAAQEAVLRVFERILEVAAVVDGVPP 147

Query: 105 ----NCRLLADTSQIGYMIGKSGSRIKSIEKD 22
               +CRLLA+TSQ+G +IGK G  ++ I ++
Sbjct: 148 GGVVSCRLLAETSQVGSVIGKGGKVVEKIRRE 179



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
 Frame = -2

Query: 390 VAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVIHGCQERVIHIFSSELPKKTI 211
           V F++LC   + G VIGK G+IVK ++ E GA I +   +  C ER+I I +SE P    
Sbjct: 299 VIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITASENP---- 354

Query: 210 TLKKDFKGEENEVTSAQHGLIRVLERVLEV----------FPTINNCRLLADTSQIGYMI 61
                    E+  + AQ+G+I V  R +E             +  + RL+  ++Q+G ++
Sbjct: 355 ---------ESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLM 405

Query: 60  GKSGSRIKSIEK 25
           GK G+ I  + K
Sbjct: 406 GKGGTIISEMRK 417


>emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
          Length = 587

 Score =  103 bits (256), Expect = 2e-20
 Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 15/152 (9%)
 Frame = -2

Query: 432 PSSTNKRRCRQP-------NHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEV 274
           P+ ++KR    P        HVAFRLLCH S+ G VIGKSG IVK ++ +TGARI++++ 
Sbjct: 30  PNGSSKRSKPPPPPIPVPAGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDS 89

Query: 273 IHGCQERVIHIFSSELPKKTITLKKDFKGEENEVTSAQHGLIRVLERVLEVFPTIN---- 106
                 RVI + +     + I L+     EE E ++AQ  ++RV ER+LEV   ++    
Sbjct: 90  PSTSDHRVILVIAPASVNRRIALQG--SSEEVEASAAQEAVLRVFERILEVAAVVDGVPP 147

Query: 105 ----NCRLLADTSQIGYMIGKSGSRIKSIEKD 22
               +CRLLA+TSQ+G +IGK G  ++ I ++
Sbjct: 148 GGVVSCRLLAETSQVGSVIGKGGKVVEKIRRE 179


>ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 698

 Score =  100 bits (250), Expect = 9e-20
 Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 12/138 (8%)
 Frame = -2

Query: 399 PNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVIHGCQERVIHIFSSELPK 220
           P HV+FRLLCH S+ G +IGKSG+I+K ++Q++GA+I+++E      +RVI +    + +
Sbjct: 53  PGHVSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITV----IAE 108

Query: 219 KTITLKKDFKGEENEVTSAQHGLIRVLERVLEVFPT------------INNCRLLADTSQ 76
             I  K   + EE +V+ AQ GLIRV ER+LEV               + +CR+LA + Q
Sbjct: 109 GQIVSKVRVESEEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQ 168

Query: 75  IGYMIGKSGSRIKSIEKD 22
            G +IGK G  ++ I KD
Sbjct: 169 AGSVIGKGGKVVEKIRKD 186



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 41/142 (28%), Positives = 68/142 (47%)
 Frame = -2

Query: 450 MVENDNPSSTNKRRCRQPNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVI 271
           ++E D   S + +  +Q   V F++LC     G VIGK G+I+K ++ ETGA I +   I
Sbjct: 287 LLETDRVPSLDMKLFQQ--EVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATI 344

Query: 270 HGCQERVIHIFSSELPKKTITLKKDFKGEENEVTSAQHGLIRVLERVLEVFPTINNCRLL 91
               ER+I + +SE P             E+  ++AQ  ++ V              RL+
Sbjct: 345 AESDERLITVIASENP-------------ESRYSAAQKAVVLVFS------------RLV 379

Query: 90  ADTSQIGYMIGKSGSRIKSIEK 25
             ++Q+G ++GK G  I  + K
Sbjct: 380 VPSNQVGCLLGKGGIIISDMRK 401