BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032377
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514722.1| pentatricopeptide repeat-containing protein,...    96   6e-18
ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|2...    95   7e-18
ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containi...    94   2e-17
ref|XP_003622167.1| Pentatricopeptide repeat protein [Medicago t...    94   2e-17

>ref|XP_002514722.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546326|gb|EEF47828.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 479

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = -1

Query: 579 YGSVYDLLIPKLCRGGEFEKGRLLWDEAMKMGITLQCSSDVLDPTVTEVFMPNKKVEE 406
           YG VYDLLIPKLC GG FEKG+ LWDEAM MG+T+ CSS+VLDP++T+VF P +KVEE
Sbjct: 378 YGPVYDLLIPKLCIGGNFEKGKELWDEAMAMGVTVHCSSEVLDPSITKVFEPTRKVEE 435


>ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|222859274|gb|EEE96821.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = -1

Query: 579 YGSVYDLLIPKLCRGGEFEKGRLLWDEAMKMGITLQCSSDVLDPTVTEVFMPNKKVEE 406
           YG VYD+LIPKLC+GG+FE+GR LW+EA  MG++  CSSDVLDP++TEVF P +KVEE
Sbjct: 395 YGPVYDILIPKLCKGGDFERGRELWEEATAMGVSFSCSSDVLDPSITEVFKPRRKVEE 452


>ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
           gi|449477571|ref|XP_004155060.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 39/57 (68%), Positives = 50/57 (87%)
 Frame = -1

Query: 579 YGSVYDLLIPKLCRGGEFEKGRLLWDEAMKMGITLQCSSDVLDPTVTEVFMPNKKVE 409
           YG VYD+LIPKLCRGGEFE GR LW+EAM MG++L CSS++LDP++T+VF P +K+E
Sbjct: 402 YGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIE 458


>ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Glycine max]
          Length = 451

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/54 (75%), Positives = 47/54 (87%)
 Frame = -1

Query: 579 YGSVYDLLIPKLCRGGEFEKGRLLWDEAMKMGITLQCSSDVLDPTVTEVFMPNK 418
           YG VYD+LIPKLCRGG+FEKGR LWDEA  MGITLQCS DVLDP++TEV+ P +
Sbjct: 359 YGPVYDVLIPKLCRGGDFEKGRELWDEASGMGITLQCSEDVLDPSITEVYKPTR 412


>ref|XP_003622167.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497182|gb|AES78385.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 563

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 42/61 (68%), Positives = 53/61 (86%)
 Frame = -1

Query: 579 YGSVYDLLIPKLCRGGEFEKGRLLWDEAMKMGITLQCSSDVLDPTVTEVFMPNKKVEEVS 400
           YG VYD+LIPKLCRGG+FEKGR LWDE   MGITLQCS DVLDP++TEV++P K+ E+++
Sbjct: 466 YGPVYDVLIPKLCRGGDFEKGRELWDEGTYMGITLQCSKDVLDPSITEVYIP-KRPEKIN 524

Query: 399 M 397
           +
Sbjct: 525 V 525