BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032177
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containi...   154   6e-36
emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]   151   5e-35
ref|XP_002466302.1| hypothetical protein SORBIDRAFT_01g005290 [S...   119   3e-25
ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
ref|XP_002512576.1| pentatricopeptide repeat-containing protein,...   118   6e-25

>ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62590-like [Vitis vinifera]
          Length = 730

 Score =  154 bits (390), Expect = 6e-36
 Identities = 75/121 (61%), Positives = 93/121 (76%)
 Frame = -2

Query: 370 KAFEILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAELI 191
           KAFE+LSRM+V SF PDSA YSAL+ G CK  K +D LELF + C ++WVLDS  YAEL+
Sbjct: 426 KAFELLSRMIVSSFTPDSATYSALVIGNCKLSKCKDGLELFHQVCSKNWVLDSASYAELV 485

Query: 190 ECLCLIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAHHSGIS 11
           E LC ++RIQEAAEVF ++ S GC + SSS DML+KG C++GK+DEAI L  LA +SG S
Sbjct: 486 ETLCQMERIQEAAEVFCYMSSNGCALKSSSLDMLMKGICVTGKVDEAIRLLVLACYSGTS 545

Query: 10  C 8
           C
Sbjct: 546 C 546


>emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]
          Length = 730

 Score =  151 bits (382), Expect = 5e-35
 Identities = 74/121 (61%), Positives = 92/121 (76%)
 Frame = -2

Query: 370 KAFEILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAELI 191
           KAFE+LSRM+V SF PDSA YSAL+ G CK  K +D LELF + C ++WVLDS  YAEL+
Sbjct: 426 KAFELLSRMIVSSFTPDSATYSALVIGNCKLSKCKDGLELFHQVCSKNWVLDSASYAELV 485

Query: 190 ECLCLIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAHHSGIS 11
           E LC ++RIQEAAEVF ++ S  C + SSS DML+KG C++GK+DEAI L  LA +SG S
Sbjct: 486 ETLCQMERIQEAAEVFCYMSSNRCALKSSSLDMLMKGICVTGKVDEAIRLLVLACYSGTS 545

Query: 10  C 8
           C
Sbjct: 546 C 546


>ref|XP_002466302.1| hypothetical protein SORBIDRAFT_01g005290 [Sorghum bicolor]
           gi|241920156|gb|EER93300.1| hypothetical protein
           SORBIDRAFT_01g005290 [Sorghum bicolor]
          Length = 699

 Score =  119 bits (297), Expect = 3e-25
 Identities = 56/122 (45%), Positives = 87/122 (71%)
 Frame = -2

Query: 373 RKAFEILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAEL 194
           R+A E++ RM+V SF PD   YSA+IS YC+   + DAL +FR A + +  L+S  +++L
Sbjct: 397 RRASELIGRMVVSSFAPDGTTYSAVISCYCRLGLYIDALNMFRRASISNLSLNSESFSQL 456

Query: 193 IECLCLIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAHHSGI 14
           +E LC  KRI+EA EVF +  ++GC++++ S DML++G+C+SGK+ EA+ L +LA  +G 
Sbjct: 457 VEVLCHAKRIEEAIEVFKYHYNRGCSLTNKSLDMLIQGSCMSGKIHEAVKLRTLAVCTGT 516

Query: 13  SC 8
           SC
Sbjct: 517 SC 518


>ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|222871421|gb|EEF08552.1|
           predicted protein [Populus trichocarpa]
          Length = 725

 Score =  119 bits (297), Expect = 3e-25
 Identities = 57/121 (47%), Positives = 82/121 (67%)
 Frame = -2

Query: 370 KAFEILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAELI 191
           KA+E+L RM++ S IPD A YSAL++G C+  K+EDAL+LF +   + W+LD   Y+ELI
Sbjct: 421 KAYELLGRMIISSLIPDYATYSALVAGNCRLSKYEDALQLFLQLHAKCWILDPASYSELI 480

Query: 190 ECLCLIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAHHSGIS 11
           E LC  ++  EA +VF ++    C++ S  F ML+KG C  G + EA+ L SLA++SG S
Sbjct: 481 EGLCRGEKYLEAVKVFCYMSENRCSLQSLPFIMLIKGICDMGMIGEAVRLQSLAYNSGTS 540

Query: 10  C 8
           C
Sbjct: 541 C 541



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 34/111 (30%), Positives = 55/111 (49%)
 Frame = -2

Query: 358 ILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAELIECLC 179
           IL  ML    +P+ + Y   I  +C+E + E+ + LFR+    ++  DS  Y  LI+CLC
Sbjct: 255 ILHEMLELGCLPELSFYRTTIPLFCREDRLEEGIRLFRKMKESNFTPDSFIYGALIQCLC 314

Query: 178 LIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAH 26
              R+ EA  +   +        ++ F  +V G C  GK++EA+ L    H
Sbjct: 315 KQLRLDEAVNLLEEMMESQLEGDNNVFVDVVNGFCKLGKINEAVKLLEDKH 365


>ref|XP_002512576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548537|gb|EEF50028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 739

 Score =  118 bits (295), Expect = 6e-25
 Identities = 56/122 (45%), Positives = 78/122 (63%)
 Frame = -2

Query: 373 RKAFEILSRMLVYSFIPDSAIYSALISGYCKECKFEDALELFREACVRDWVLDSGDYAEL 194
           RKA E+L RM++ S +P+ A YSAL+ G+C+  K EDAL+LF + C + W+LD   Y+EL
Sbjct: 434 RKASELLGRMIISSLVPNRATYSALVLGHCRLNKCEDALQLFLQLCTKCWILDYVSYSEL 493

Query: 193 IECLCLIKRIQEAAEVFHFLCSKGCTISSSSFDMLVKGTCLSGKLDEAISLYSLAHHSGI 14
           IE LC   +  EA EVFH++   GC     SF  L+KG C  G +D+A+ L  +AH  G+
Sbjct: 494 IEGLCEAGKHLEATEVFHYMFMNGCLPQYLSFSKLIKGICEKGMVDKAVKLQQMAHDFGM 553

Query: 13  SC 8
            C
Sbjct: 554 CC 555