BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032026
         (377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    79   4e-13
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               61   1e-07
emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]    59   3e-07
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]    59   4e-07
emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera]    57   2e-06

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
 Frame = -3

Query: 366 MAKDNVLGRTLFQGTTENGLHPMKFKHFTLSQRDFSKHPASHPSFSHPQAASAQLHSNNN 187
           + K+N+ GR L QG  ENGL+P+                          A     H +  
Sbjct: 412 VVKENLTGRILLQGVVENGLYPL--------------------------AGCKTFHKSLT 445

Query: 186 HPTSSVFVGVKANAQTWHRRLGHPSVFVLNKIMSVNKLQVSGSCT-LPFCNVCRLGKSTK 10
               S  +GV+ANA TWH RLGHPS  + N +   NKL V GS T L FC+ C+LGK+ +
Sbjct: 446 --CLSTTIGVRANADTWHSRLGHPSSVIFNSLFHSNKLSVKGSSTKLEFCSACQLGKAKQ 503

Query: 9   LSF 1
           L F
Sbjct: 504 LPF 506


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/115 (30%), Positives = 52/115 (45%)
 Frame = -3

Query: 360 KDNVLGRTLFQGTTENGLHPMKFKHFTLSQRDFSKHPASHPSFSHPQAASAQLHSNNNHP 181
           KD   G+ L+ G +ENGL+P +F   T                             +   
Sbjct: 442 KDLKTGKMLYHGKSENGLYPFRFPSKT-----------------------------SKVS 472

Query: 180 TSSVFVGVKANAQTWHRRLGHPSVFVLNKIMSVNKLQVSGSCTLPFCNVCRLGKS 16
           +S  +V  + +A+TWH RLGH S  +++K++S   + V GS    FC  C LGKS
Sbjct: 473 SSLAYVSSRVSAETWHSRLGHASSTIVSKVLSNKAVPVLGSSNFSFCQSCPLGKS 527


>emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]
          Length = 879

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = -3

Query: 360 KDNVLGRTLFQGTTENGLHPMKFKHFTLSQRDFSKHPASHPSFSHPQAASAQLHSNNNHP 181
           KD   G TL +G +E GL+P++    ++                           N +H 
Sbjct: 234 KDIQTGTTLLEGKSEGGLYPIQLXSMSI---------------------------NKSHA 266

Query: 180 TSSVFVGVKANAQTWHRRLGHPSVFVLNKIMSVNKLQVSGSCT-LPFCNVCRLGKST 13
            S+V VG+KA+   WH RLGH S+ +++++++ + L V GS   + FC  C+LGK +
Sbjct: 267 LSAV-VGIKASVSIWHSRLGHASLPIVSQLLNKHSLPVEGSVNKMHFCESCQLGKDS 322


>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
          Length = 1099

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
 Frame = -3

Query: 366 MAKDNVLGRTLFQGTTENGLHPMKFKHFTLSQR--DFSKHPASHPSFSHPQAASAQLHS- 196
           + +D + G TL +G  ++GL+ ++      +Q    +S  P S  S  + + AS   HS 
Sbjct: 212 ICQDLITGATLLRGVHDHGLYHLELSPIRTTQAFLAYSSQPGSCSSCFYNKTASC--HSS 269

Query: 195 --------NNNHPTSSVFVGVKANAQT-WHRRLGHPSVFVLNKIMSVNKLQVSGSCTLPF 43
                   N +H + +  V   +  ++ WH RLGHPS  VLNKI+  + + +S S    F
Sbjct: 270 MACNVSFPNKSHXSCNNSVVQDSXVKSLWHNRLGHPSXSVLNKIL--HSMSISPSSHQMF 327

Query: 42  CNVCRLGKSTKLSF 1
           C+ C+LGK  + SF
Sbjct: 328 CDACKLGKLHQESF 341


>emb|CAN62533.1| hypothetical protein VITISV_030700 [Vitis vinifera]
          Length = 731

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = -3

Query: 183 PTSS---VFVGVKANAQTWHRRLGHPSVFVLNKIMSVNKLQVSGSCTLPF-CNVCRLGKS 16
           P SS    F  VK ++  WH RLGHP+  +L  ++S N L +S S  L F CN C   KS
Sbjct: 271 PVSSPLLAFSSVKTSSSEWHHRLGHPAFPILKHVISTNNLALSSSSLLHFSCNACHCNKS 330

Query: 15  TKLSF 1
            KLSF
Sbjct: 331 HKLSF 335