BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031939
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    60   3e-15
emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera]    58   3e-15
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...    57   2e-13
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    56   2e-13
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    62   2e-13

>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 59.7 bits (143), Expect(2) = 3e-15
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
 Frame = -2

Query: 367 WKQINDLGPYSLFLGFNTXXXXXXXXXXSFEKNCIYFTDDYRTGYYGTDSEGGHAMGVFN 188
           W +++ LG  +LF+G N+              NCIY+TDDY    Y     G H +G+F 
Sbjct: 307 WLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHF-GDHDLGIFK 365

Query: 187 LEDETIKP------HYTGVSTSFYSPPLWIIPELC 101
           L DETI+P      ++T  S   +SPPLW+ P  C
Sbjct: 366 LCDETIEPLPCYPRNFT--SPLQWSPPLWVSPNPC 398



 Score = 48.1 bits (113), Expect(2) = 3e-15
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
 Frame = -3

Query: 708 LAFARPGDKSWVPVQ--KNSCTVGIEDVIFYNDQFFSVNSRGKVAVYDIDCSPPQAIQLF 535
           LA+ R GDKSW  V+  ++ C    EDVIF N  F++VN  G++ + DI    P+    F
Sbjct: 192 LAYCRNGDKSWSLVENARSFC----EDVIFVNGMFYAVNKAGQIVICDISSDSPRV--SF 245

Query: 534 GAFPDCCSVSQFYXXXXXXXXXXXVKYCSFY------DEEPY--YKTNGFEVFKADFD 385
              P        Y            +Y          D EP+  Y+T  FEVF+ D++
Sbjct: 246 METPRQAGGDMQYLVNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWN 303


>emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera]
          Length = 394

 Score = 58.2 bits (139), Expect(2) = 3e-15
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -2

Query: 376 ERGWKQINDLGPYSLFLGFNTXXXXXXXXXXSFEKNCIYFTDDYRTGYYGTDSEGGHAMG 197
           ++ WK I ++   +L LG N            F+ N IYF DDY+ GY+  ++ G H MG
Sbjct: 303 QKKWKLIKNIKEKALLLGHNQAISISTKKFDGFKSNHIYFLDDYKEGYF-ENTYGCHDMG 361

Query: 196 VFNLEDETIKP--HYTGVSTSFYSPPLWIIPEL 104
           VFN++    KP  H T +   + SP  W+ PEL
Sbjct: 362 VFNIKTHLFKPIFHRTQL---WASPLFWMRPEL 391



 Score = 49.7 bits (117), Expect(2) = 3e-15
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
 Frame = -3

Query: 729 IYCPQRRLAFARPGDKSWVPVQKNSCTVGIEDVIFYNDQFFSVNSRGKVAVYDIDCSPPQ 550
           I+    +LAF +PGDK W+ ++     +  +D+++Y D F+++  R KV   DI   P  
Sbjct: 168 IHSNYNKLAFCKPGDKRWITLKSED--IQYKDLLYYKDNFYAI-GRSKVVQCDIGDDP-- 222

Query: 549 AIQLFGAFPDCCSVSQFYXXXXXXXXXXXVKYCSFYDEEP----YYKTNGFEVFKADFDE 382
            +  F   P        Y           ++Y    D E      Y+T GF+VF  D D+
Sbjct: 223 RVIPFALLPKMGYFQYRYLVESSGCLLYVLRYMDLKDNEDPLKLRYETTGFKVFDLDSDK 282


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
           gi|223551309|gb|EEF52795.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 406

 Score = 56.6 bits (135), Expect(2) = 2e-13
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = -3

Query: 708 LAFARPGDKSWVPVQKNSCTVGIEDVIFYNDQFFSVNSRGKVAVYDIDCSPPQAIQLFG- 532
           +AF + GD +W  +Q+ S  +  +DV+F+  +F++V+ +G+V++   D +PP  IQ+   
Sbjct: 185 IAFCKSGDATWFTIQETSQKIHYQDVMFHRGKFYAVDDKGRVSICITDINPPSVIQVADP 244

Query: 531 -AFPDCCSVSQFYXXXXXXXXXXXVKYCSFYDEEPYYKTNGFEVFKAD 391
              P      Q+Y            ++  +      Y+T+ F V+K D
Sbjct: 245 PPVPPLMGYKQWYLASLDEDLILAGRFRKYRGSGYEYQTHKFMVYKLD 292



 Score = 45.1 bits (105), Expect(2) = 2e-13
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -2

Query: 367 WKQINDLGPYSLFLGFNTXXXXXXXXXXSFEKNCIYFTDDYRTGYYGTDSE-GGHAMGVF 191
           W +++ LG    FLG+N           ++  NCIYFTDD      G+D    GH  G+F
Sbjct: 298 WLELDGLGDMLSFLGWNCFHSISTQNYRNYSGNCIYFTDD--KFIVGSDFPWEGHDYGIF 355

Query: 190 NLEDETIK 167
           NL+D++++
Sbjct: 356 NLDDKSVQ 363


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 56.2 bits (134), Expect(2) = 2e-13
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -2

Query: 367 WKQINDLGPYSLFLGFNTXXXXXXXXXXSFEKNCIYFTDDYRTGYYGTDSEGGHAMGVFN 188
           W+++  LG   LF+G N+              +CIY+TDDY    Y     G H +G+F 
Sbjct: 302 WERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANNY-DGHIGEHDLGIFK 360

Query: 187 LEDETIKPHYTGVSTSF----YSPPLWIIPELC 101
           L D +I+P       S+    + PPLWI P  C
Sbjct: 361 LSDGSIEPLPCYPRNSYSRLQWPPPLWISPNPC 393



 Score = 45.1 bits (105), Expect(2) = 2e-13
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = -3

Query: 729 IYCPQRRLAFARPGDKSWVPVQKNSCTVGIEDVIFYNDQFFSVNSRGKVAVYDIDCSPPQ 550
           I C    LA+ + GD+ W  V+ NS +   EDVI++N  F++VN  G++ V D++ + P+
Sbjct: 186 ILCSTGDLAYCKNGDECWNIVE-NSRSFS-EDVIYFNGLFYAVNKAGQIVVCDVNGNSPK 243

Query: 549 AIQLFGAFPDCCSVSQFYXXXXXXXXXXXVKYCSFYDEEP--YYKTNGFEVFKADFD 385
               F   P        Y            +Y     E     YKT  FEVFK D +
Sbjct: 244 V--SFIETPRQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIFIYKTARFEVFKLDLN 298


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 62.4 bits (150), Expect(2) = 2e-13
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = -2

Query: 367 WKQINDLGPYSLFLGFNTXXXXXXXXXXSFEKNCIYFTDDYRTGYYGTDSEGGHA-MGVF 191
           W+ ++ LG  +LFLG N             + NCIY+TDDY    Y  D  GG   +G+F
Sbjct: 302 WEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNY--DGIGGEQDLGIF 359

Query: 190 NLEDETIKPHYTGVSTSFYSPPLWIIPELC 101
           NLED +I+P         + PPLW+ P  C
Sbjct: 360 NLEDGSIEPLPCSHFRIRWPPPLWVTPNPC 389



 Score = 38.9 bits (89), Expect(2) = 2e-13
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = -3

Query: 708 LAFARPGDKSWVPVQKNSCTVGIEDVIFYNDQFFSVNSRGKVAVYDIDCSPPQAIQLFGA 529
           LA  R  D SW  ++        EDVIF+   F++VN  G +AV D+  S P+   +   
Sbjct: 189 LALCRKSDDSWTFLEDAQSYA--EDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSII--E 244

Query: 528 FPDCCSVSQFYXXXXXXXXXXXVKYCSF-YDEEP-----YYKTNGFEVFKAD 391
            P        Y            +Y    YD EP      Y+T  F+V + D
Sbjct: 245 MPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLD 296