BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031929
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containi...   189   2e-46
ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containi...   189   2e-46
emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]   189   2e-46
ref|XP_003617308.1| Auxin response factor [Medicago truncatula] ...   183   1e-44
ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|2...   174   5e-42

>ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  189 bits (481), Expect = 2e-46
 Identities = 87/129 (67%), Positives = 109/129 (84%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK GRL++A + L+E+S KGL LNAVG+NC+I ALCKD KV  A+ M   MSS GCKPDI
Sbjct: 60  CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDI 119

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
           +TFNS+I+GLCK ++  EALG+YQDM+LEGVIAN++TYNTLIHAF+R G +Q ALKL+N+
Sbjct: 120 FTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVND 179

Query: 362 MVFRGCPLD 388
           M+FRGCPLD
Sbjct: 180 MLFRGCPLD 188



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 44/125 (35%), Positives = 71/125 (56%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G ++K     E++ +KGL  N +  N +I+ LC+ G +  A++    M   G  PDI
Sbjct: 200 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 259

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+NS+I GLCK  R  EAL ++  + +EG+  +++TYNTLI    + G+   A  L++ 
Sbjct: 260 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 319

Query: 362 MVFRG 376
            V  G
Sbjct: 320 GVDSG 324



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 40/130 (30%), Positives = 78/130 (60%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CKV + ++A    +++  +G+  N + +N +IHA  + G + +A+K+ + M   GC  D 
Sbjct: 130 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 189

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+N +I  LC+A  + + L +++DM+ +G+  N+++ N LI+   R G +Q AL+ + +
Sbjct: 190 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 249

Query: 362 MVFRGCPLDV 391
           M+ RG   D+
Sbjct: 250 MIHRGLTPDI 259



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
 Frame = +2

Query: 11  GRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTF 190
           G + +A   + ++  +G  L+ + +N +I ALC+ G +++ + + + M S G  P+  + 
Sbjct: 168 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 227

Query: 191 NSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVF 370
           N +I GLC+   +  AL   +DM+  G+  + VTYN+LI+   + G  Q AL L +++  
Sbjct: 228 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 287

Query: 371 RG-CP 382
            G CP
Sbjct: 288 EGICP 292



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/117 (32%), Positives = 65/117 (55%)
 Frame = +2

Query: 41  EEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIYGLCKA 220
           E + + G G +   +N +I  LCK G +  A ++ ++M   GC+P++ T+  +I   CK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 221 DRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRGCPLDV 391
            R+ EA  V  +M  +G+  N+V YN LI A  ++  +Q AL +  +M  +GC  D+
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDI 119



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/109 (31%), Positives = 58/109 (53%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G +  A + L ++  +GL  + V +N +I+ LCK G+  +A+ + DK+   G  PD 
Sbjct: 235 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 294

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNG 328
            T+N++I   CK     +A  +    V  G I N VT+  L+  F++ G
Sbjct: 295 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/83 (38%), Positives = 50/83 (60%)
 Frame = +2

Query: 140 MCDKMSSVGCKPDIYTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFM 319
           M + M SVGC PDI+T+N++I GLCK   +  A  +  +M ++G   N +TY  LI  F 
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 320 RNGILQVALKLMNEMVFRGCPLD 388
           + G L+ A  +++EM  +G  L+
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALN 83


>ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  189 bits (481), Expect = 2e-46
 Identities = 87/129 (67%), Positives = 109/129 (84%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK GRL++A + L+E+S KGL LNAVG+NC+I ALCKD KV  A+ M   MSS GCKPDI
Sbjct: 453 CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDI 512

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
           +TFNS+I+GLCK ++  EALG+YQDM+LEGVIAN++TYNTLIHAF+R G +Q ALKL+N+
Sbjct: 513 FTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVND 572

Query: 362 MVFRGCPLD 388
           M+FRGCPLD
Sbjct: 573 MLFRGCPLD 581



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/121 (38%), Positives = 72/121 (59%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C V  +D A   L++++  G   NA+ +  +IHAL K G+V++ +K+ ++M  +GC PD+
Sbjct: 246 CLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDV 305

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            TFN  I+GLCK  R+ EA  +   M+L G   NS TY  L+H   R G +  A  L+N+
Sbjct: 306 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 365

Query: 362 M 364
           +
Sbjct: 366 V 366



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 44/125 (35%), Positives = 71/125 (56%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G ++K     E++ +KGL  N +  N +I+ LC+ G +  A++    M   G  PDI
Sbjct: 593 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 652

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+NS+I GLCK  R  EAL ++  + +EG+  +++TYNTLI    + G+   A  L++ 
Sbjct: 653 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 712

Query: 362 MVFRG 376
            V  G
Sbjct: 713 GVDSG 717



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 40/130 (30%), Positives = 78/130 (60%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CKV + ++A    +++  +G+  N + +N +IHA  + G + +A+K+ + M   GC  D 
Sbjct: 523 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 582

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+N +I  LC+A  + + L +++DM+ +G+  N+++ N LI+   R G +Q AL+ + +
Sbjct: 583 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 642

Query: 362 MVFRGCPLDV 391
           M+ RG   D+
Sbjct: 643 MIHRGLTPDI 652



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +2

Query: 11  GRLDKASDALEE-ISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYT 187
           GRLD+A   + E + + G G +   +N +I  LCK G +  A ++ ++M   GC+P++ T
Sbjct: 385 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT 444

Query: 188 FNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMV 367
           +  +I   CK  R+ EA  V  +M  +G+  N+V YN LI A  ++  +Q AL +  +M 
Sbjct: 445 YTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMS 504

Query: 368 FRGCPLDV 391
            +GC  D+
Sbjct: 505 SKGCKPDI 512



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
 Frame = +2

Query: 11  GRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTF 190
           G + +A   + ++  +G  L+ + +N +I ALC+ G +++ + + + M S G  P+  + 
Sbjct: 561 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 620

Query: 191 NSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVF 370
           N +I GLC+   +  AL   +DM+  G+  + VTYN+LI+   + G  Q AL L +++  
Sbjct: 621 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 680

Query: 371 RG-CP 382
            G CP
Sbjct: 681 EGICP 685



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/111 (31%), Positives = 59/111 (53%)
 Frame = +2

Query: 44  EISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIYGLCKAD 223
           E+ +KG+      F  V+ ALC   +VD A  +   M+  GC P+   + ++I+ L K  
Sbjct: 225 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVG 284

Query: 224 RMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRG 376
           R+ E L + ++M+L G I +  T+N  IH   +   +  A KL++ M+ RG
Sbjct: 285 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG 335



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/109 (31%), Positives = 58/109 (53%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G +  A + L ++  +GL  + V +N +I+ LCK G+  +A+ + DK+   G  PD 
Sbjct: 628 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 687

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNG 328
            T+N++I   CK     +A  +    V  G I N VT+  L+  F++ G
Sbjct: 688 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +2

Query: 149 KMSSVGCKPDIYTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNG 328
           +M S G  P +YTF  V+  LC  + +  A  + +DM   G + N++ Y TLIHA  + G
Sbjct: 225 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVG 284

Query: 329 ILQVALKLMNEMVFRGCPLDV 391
            +   LKL+ EM+  GC  DV
Sbjct: 285 RVNEVLKLLEEMLLMGCIPDV 305


>emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  189 bits (481), Expect = 2e-46
 Identities = 87/129 (67%), Positives = 109/129 (84%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK GRL++A + L+E+S KGL LNAVG+NC+I ALCKD KV  A+ M   MSS GCKPDI
Sbjct: 435 CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDI 494

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
           +TFNS+I+GLCK ++  EALG+YQDM+LEGVIAN++TYNTLIHAF+R G +Q ALKL+N+
Sbjct: 495 FTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVND 554

Query: 362 MVFRGCPLD 388
           M+FRGCPLD
Sbjct: 555 MLFRGCPLD 563



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/121 (38%), Positives = 72/121 (59%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C V  +D A   L++++  G   NA+ +  +IHAL K G+V++ +K+ ++M  +GC PD+
Sbjct: 228 CLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDV 287

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            TFN  I+GLCK  R+ EA  +   M+L G   NS TY  L+H   R G +  A  L+N+
Sbjct: 288 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 347

Query: 362 M 364
           +
Sbjct: 348 V 348



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 44/125 (35%), Positives = 71/125 (56%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G ++K     E++ +KGL  N +  N +I+ LC+ G +  A++    M   G  PDI
Sbjct: 575 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 634

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+NS+I GLCK  R  EAL ++  + +EG+  +++TYNTLI    + G+   A  L++ 
Sbjct: 635 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 694

Query: 362 MVFRG 376
            V  G
Sbjct: 695 GVDSG 699



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 40/130 (30%), Positives = 78/130 (60%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CKV + ++A    +++  +G+  N + +N +IHA  + G + +A+K+ + M   GC  D 
Sbjct: 505 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 564

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+N +I  LC+A  + + L +++DM+ +G+  N+++ N LI+   R G +Q AL+ + +
Sbjct: 565 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 624

Query: 362 MVFRGCPLDV 391
           M+ RG   D+
Sbjct: 625 MIHRGLTPDI 634



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +2

Query: 11  GRLDKASDALEE-ISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYT 187
           GRLD+A   + E + + G G +   +N +I  LCK G +  A ++ ++M   GC+P++ T
Sbjct: 367 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT 426

Query: 188 FNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMV 367
           +  +I   CK  R+ EA  V  +M  +G+  N+V YN LI A  ++  +Q AL +  +M 
Sbjct: 427 YTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMS 486

Query: 368 FRGCPLDV 391
            +GC  D+
Sbjct: 487 SKGCKPDI 494



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
 Frame = +2

Query: 11  GRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTF 190
           G + +A   + ++  +G  L+ + +N +I ALC+ G +++ + + + M S G  P+  + 
Sbjct: 543 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 602

Query: 191 NSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVF 370
           N +I GLC+   +  AL   +DM+  G+  + VTYN+LI+   + G  Q AL L +++  
Sbjct: 603 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 662

Query: 371 RG-CP 382
            G CP
Sbjct: 663 EGICP 667



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/111 (31%), Positives = 59/111 (53%)
 Frame = +2

Query: 44  EISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIYGLCKAD 223
           E+ +KG+      F  V+ ALC   +VD A  +   M+  GC P+   + ++I+ L K  
Sbjct: 207 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVG 266

Query: 224 RMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRG 376
           R+ E L + ++M+L G I +  T+N  IH   +   +  A KL++ M+ RG
Sbjct: 267 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG 317



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/109 (31%), Positives = 58/109 (53%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G +  A + L ++  +GL  + V +N +I+ LCK G+  +A+ + DK+   G  PD 
Sbjct: 610 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 669

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNG 328
            T+N++I   CK     +A  +    V  G I N VT+  L+  F++ G
Sbjct: 670 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +2

Query: 149 KMSSVGCKPDIYTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNG 328
           +M S G  P +YTF  V+  LC  + +  A  + +DM   G + N++ Y TLIHA  + G
Sbjct: 207 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVG 266

Query: 329 ILQVALKLMNEMVFRGCPLDV 391
            +   LKL+ EM+  GC  DV
Sbjct: 267 RVNEVLKLLEEMLLMGCIPDV 287


>ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
           gi|355518643|gb|AET00267.1| Auxin response factor
           [Medicago truncatula]
          Length = 948

 Score =  183 bits (464), Expect = 1e-44
 Identities = 86/129 (66%), Positives = 106/129 (82%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK G  ++AS  +  +SAKGL LN VG+NC+I ALCKDGK+  A++M  +MSS GCKPDI
Sbjct: 418 CKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDI 477

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
           YTFNS+IYGLCK D+M EALG+Y+DM+LEGVIAN+VTYNTLIHAF+R  ++Q A KL+ E
Sbjct: 478 YTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGE 537

Query: 362 MVFRGCPLD 388
           M FRGCPLD
Sbjct: 538 MRFRGCPLD 546



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 41/121 (33%), Positives = 75/121 (61%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C V  +D A   L +++  G   N++ +  +IHAL ++ +V++AMK+ ++M  +GC+PD+
Sbjct: 211 CMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDV 270

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            TFN VI+GLCKA R+ EA  ++  M+L    A+++    L+H   R G +  A  ++++
Sbjct: 271 QTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSK 330

Query: 362 M 364
           +
Sbjct: 331 I 331



 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 42/125 (33%), Positives = 70/125 (56%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK G  +K    +E++  + +  +    N +I++ C+ GKV+ A++    M   G  PDI
Sbjct: 558 CKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDI 617

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+NS+I GLCK  R  EAL ++  +  +G+  ++VTYNTLI  +   G+   A +L+ +
Sbjct: 618 VTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFK 677

Query: 362 MVFRG 376
            V  G
Sbjct: 678 GVSNG 682



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
 Frame = +2

Query: 11  GRLDKASDAL-EEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYT 187
           GR ++A D L + +   G   +A  FN +I  LCK G +  A++  D+M   G +P++ T
Sbjct: 350 GRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVIT 409

Query: 188 FNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMV 367
           +  +I G CK     EA  V   M  +G+  N+V YN LI A  ++G +Q AL++  EM 
Sbjct: 410 YTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMS 469

Query: 368 FRGCPLDV 391
            +GC  D+
Sbjct: 470 SKGCKPDI 477



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 39/130 (30%), Positives = 69/130 (53%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK  ++++A     ++  +G+  N V +N +IHA  +   + QA K+  +M   GC  D 
Sbjct: 488 CKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDN 547

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+N +I  LCK     + LG+ + M  E +  +  + N LI++F R G +  AL+ + +
Sbjct: 548 ITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRD 607

Query: 362 MVFRGCPLDV 391
           M+ RG   D+
Sbjct: 608 MIQRGLTPDI 617



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/120 (29%), Positives = 65/120 (54%)
 Frame = +2

Query: 17  LDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNS 196
           + +A   + E+  +G  L+ + +N +I ALCK G  ++ + + ++M      P I + N 
Sbjct: 528 IQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNI 587

Query: 197 VIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRG 376
           +I   C+  ++ +AL   +DM+  G+  + VTYN+LI+   + G  Q AL L N +  +G
Sbjct: 588 LINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKG 647



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/103 (33%), Positives = 48/103 (46%)
 Frame = +2

Query: 83  FNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIYGLCKADRMTEALGVYQDMV 262
           +N V+  L        A  +   M S G  P +YTF  V+   C  + +  A  + +DM 
Sbjct: 168 YNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMT 227

Query: 263 LEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRGCPLDV 391
             G + NS+ Y  LIHA   N  +  A+KL+ EM   GC  DV
Sbjct: 228 KHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDV 270



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/108 (28%), Positives = 60/108 (55%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+ G+++ A   L ++  +GL  + V +N +I+ LCK G+  +A+ + + + + G  PD 
Sbjct: 593 CRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDA 652

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRN 325
            T+N++I   C      +A  +    V  G I N +T++ LI+ F++N
Sbjct: 653 VTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKN 700



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%)
 Frame = +2

Query: 26  ASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIY 205
           A +   ++ ++G+      F  V+ A C   +VD A  +   M+  GC P+   +  +I+
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243

Query: 206 GLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRGCPL 385
            L + +R+ EA+ + ++M L G   +  T+N +IH   + G +  A KL + M+ R    
Sbjct: 244 ALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTA 303

Query: 386 D 388
           D
Sbjct: 304 D 304


>ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|222853877|gb|EEE91424.1|
           predicted protein [Populus trichocarpa]
          Length = 724

 Score =  174 bits (442), Expect = 5e-42
 Identities = 81/129 (62%), Positives = 104/129 (80%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK G+L++A   L E+  KG  LN VG+N +I ALCK GK+ +A+ M  +MSS GCKPDI
Sbjct: 428 CKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDI 487

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
           +TFNS+I+GLC+ D M +AL +Y+DMVLEGVIANSVT+NTLIHAF+R G +Q ALKL+N+
Sbjct: 488 FTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVND 547

Query: 362 MVFRGCPLD 388
           M+FRGCPLD
Sbjct: 548 MLFRGCPLD 556



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           CK G ++K     EE+  KGL  + +  N +I+  C  GKV  A++    M   G  PDI
Sbjct: 568 CKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDI 627

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+NS+I GLCK  R+ EAL +++ +  EG+  +S+TYNTLI    R G    A  L+  
Sbjct: 628 VTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYR 687

Query: 362 MVFRG-CPLDV 391
            V  G  P DV
Sbjct: 688 GVENGFVPNDV 698



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 41/130 (31%), Positives = 76/130 (58%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C+V  ++ A     ++  +G+  N+V FN +IHA  + G++ +A+K+ + M   GC  D 
Sbjct: 498 CRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDE 557

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            T+N +I  LCK   + + LG++++M+ +G+  + +T N LI+ F   G +  AL+ M +
Sbjct: 558 ITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRD 617

Query: 362 MVFRGCPLDV 391
           M+ RG   D+
Sbjct: 618 MIHRGFSPDI 627



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/121 (33%), Positives = 71/121 (58%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C V  +D A   L +++  G   N++ +  +I AL K  +VD+A+K+ ++M  +GC PD+
Sbjct: 221 CMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDV 280

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNE 361
            TFN+VIYG C+ +R+ E   +   M+L+G   N +TY  L+H   +   +  A  L+++
Sbjct: 281 NTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSK 340

Query: 362 M 364
           +
Sbjct: 341 V 341



 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 40/128 (31%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
 Frame = +2

Query: 11  GRLDKASDAL-EEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYT 187
           GRL++A+  + +++   G   +   F+ +++ LCK G    A+++ + M + GCKP++ T
Sbjct: 360 GRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNT 419

Query: 188 FNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMV 367
           +  +I G CK  ++ EA  + ++M+ +G   N+V YN LI A  ++G +  AL +  EM 
Sbjct: 420 YTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMS 479

Query: 368 FRGCPLDV 391
            +GC  D+
Sbjct: 480 SKGCKPDI 487



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 40/126 (31%), Positives = 68/126 (53%)
 Frame = +2

Query: 11  GRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTF 190
           G + +A   + ++  +G  L+ + +N +I ALCK G V++ + + ++M   G  P I T 
Sbjct: 536 GEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITC 595

Query: 191 NSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVF 370
           N +I G C A ++  AL   +DM+  G   + VTYN+LI+   + G +Q AL L  ++  
Sbjct: 596 NILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQA 655

Query: 371 RGCPLD 388
            G   D
Sbjct: 656 EGIQPD 661



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 38/117 (32%), Positives = 64/117 (54%)
 Frame = +2

Query: 26  ASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIY 205
           AS+   ++ +KG+  N   F  V+ ALC   +VD A  +   M+  GC P+   + ++I 
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLID 253

Query: 206 GLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRG 376
            L K DR+ EAL + ++M L G   +  T+NT+I+ F R   +    KL++ M+ +G
Sbjct: 254 ALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKG 310



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 30/105 (28%), Positives = 60/105 (57%)
 Frame = +2

Query: 2   CKVGRLDKASDALEEISAKGLGLNAVGFNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDI 181
           C  G++  A + + ++  +G   + V +N +I+ LCK G++ +A+ + +K+ + G +PD 
Sbjct: 603 CTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDS 662

Query: 182 YTFNSVIYGLCKADRMTEALGVYQDMVLEGVIANSVTYNTLIHAF 316
            T+N++I  LC+     +A  +    V  G + N VT+N L++ F
Sbjct: 663 ITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNF 707



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/103 (34%), Positives = 50/103 (48%)
 Frame = +2

Query: 83  FNCVIHALCKDGKVDQAMKMCDKMSSVGCKPDIYTFNSVIYGLCKADRMTEALGVYQDMV 262
           +N V+  L        A  +   M S G  P+ YTF  V+  LC  + +  A  + +DM 
Sbjct: 178 YNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMT 237

Query: 263 LEGVIANSVTYNTLIHAFMRNGILQVALKLMNEMVFRGCPLDV 391
             G + NS+ Y TLI A  +   +  ALKL+ EM   GCP DV
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDV 280