BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031886
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic se...    78   7e-13
ref|XP_002891146.1| pentatricopeptide repeat-containing protein ...    77   1e-12
ref|XP_002881665.1| pentatricopeptide repeat-containing protein ...    77   2e-12
ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...    76   2e-12
ref|NP_174428.1| pentatricopeptide repeat-containing protein [Ar...    75   4e-12

>gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
           gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus
           0_14992_02 genomic sequence gi|383167279|gb|AFG66682.1|
           Pinus taeda anonymous locus 0_14992_02 genomic sequence
           gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus
           0_14992_02 genomic sequence
          Length = 150

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 33/71 (46%), Positives = 50/71 (70%)
 Frame = -1

Query: 215 VDEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPKRDIVSWTSMISG 36
           +++GK +H    + G   +VYVG+AL++MY+K G +E   Q+FD+MP+RD++SW SMI G
Sbjct: 53  LEQGKEIHHEINRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVISWNSMIGG 112

Query: 35  YVEHGFYKEGL 3
           Y  HG  +E L
Sbjct: 113 YATHGPPEEAL 123


>ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336988|gb|EFH67405.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 554

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/83 (44%), Positives = 54/83 (65%)
 Frame = -1

Query: 251 PWMWKEMNLLLKVDEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPK 72
           P + K +  L KV EG++VH  A K GL  + YV  +LM MY   G +E+  ++FDEMP+
Sbjct: 34  PVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALGKMEITHKVFDEMPE 93

Query: 71  RDIVSWTSMISGYVEHGFYKEGL 3
           RD+VSW  +IS YV HG +++ +
Sbjct: 94  RDVVSWNGLISSYVGHGRFEDAI 116


>ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327504|gb|EFH57924.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 836

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 33/70 (47%), Positives = 50/70 (71%)
 Frame = -1

Query: 212 DEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPKRDIVSWTSMISGY 33
           +EG R+H++  ++G   +VY+GTAL+EMY K GDL    Q+FD+MP +DIV+W +M+SG 
Sbjct: 117 EEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGL 176

Query: 32  VEHGFYKEGL 3
            ++G   E L
Sbjct: 177 AQNGCSSEAL 186



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/71 (36%), Positives = 48/71 (67%)
 Frame = -1

Query: 215 VDEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPKRDIVSWTSMISG 36
           +++G  +HE   + G++ ++ V T+L+ MY K G+LE+  QLF ++  RD+VSW++MI+ 
Sbjct: 316 LEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIAS 375

Query: 35  YVEHGFYKEGL 3
           + + G + E L
Sbjct: 376 FEQAGQHDEAL 386


>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 33/75 (44%), Positives = 51/75 (68%)
 Frame = -1

Query: 227 LLLKVDEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPKRDIVSWTS 48
           +L  + EG+ VHE+AKK GL  +V V  +L++MYI  G ++    +FD MP +D++SWT 
Sbjct: 206 MLKSLQEGRYVHEIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTE 265

Query: 47  MISGYVEHGFYKEGL 3
           +  GYV++G + EGL
Sbjct: 266 IFRGYVKNGGFNEGL 280



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = -1

Query: 209 EGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPKRDIVSWTSMISGYV 30
           +GK +H    + G+  NV V  A+++MY+K G +E   ++F  M  RD +SWT MI GY 
Sbjct: 313 QGKEIHAYLLRNGIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDAISWTVMILGYS 372

Query: 29  EHG 21
            HG
Sbjct: 373 LHG 375


>ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g31430 gi|12322531|gb|AAG51260.1|AC027135_1
           PPR-repeat protein [Arabidopsis thaliana]
           gi|332193234|gb|AEE31355.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 36/83 (43%), Positives = 54/83 (65%)
 Frame = -1

Query: 251 PWMWKEMNLLLKVDEGKRVHEVAKKLGLVRNVYVGTALMEMYIKFGDLEMGFQLFDEMPK 72
           P + K +  L KV EG++VH  A K GL  + YV  +LM MY   G +E+  ++FDEMP+
Sbjct: 50  PVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQ 109

Query: 71  RDIVSWTSMISGYVEHGFYKEGL 3
           RD+VSW  +IS YV +G +++ +
Sbjct: 110 RDVVSWNGLISSYVGNGRFEDAI 132