BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031844
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    87   2e-15
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    86   3e-15
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...    77   1e-12
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    76   3e-12
ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinif...    75   7e-12

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 51/111 (45%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
 Frame = +3

Query: 66  RYIVESNGDFLQVIR---TTEDEGP-----IYYTTGFIVFKLDPDAAKWTEMKSLCGRML 221
           +Y+VES  + L V R    T D  P     IY TT F V +LD  A +W  + SL  R L
Sbjct: 254 QYLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRAL 313

Query: 222 FLGENSSISLLAADFPGCKPNSIYFTDDYLAGYATDPDAPRDIGVFNIEYG 374
           FLGEN S+SL + DFPGCK N IY+TDDY           +D+G+FN+E G
Sbjct: 314 FLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
 Frame = +3

Query: 66  RYIVESNGDFLQVIR--------TTEDEGPIYYTTGFIVFKLDPDAAKWTEMKSLCGRML 221
           +Y+VES  + L V R          +    IY TT F V +LD  A +W  + SL  R L
Sbjct: 254 QYLVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRAL 313

Query: 222 FLGENSSISLLAADFPGCKPNSIYFTDDYLAGYATDPDAPRDIGVFNIEYG 374
           FLGEN S+SL + DFPGCK N IY+TDDY           +D+G+FN+E G
Sbjct: 314 FLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
 Frame = +3

Query: 69  YIVESNGDFLQVIRTT---------EDEGPIYYTTGFIVFKLDPDAAKWTEMKSLCGRML 221
           Y V S GD L +IR           E+   +Y T GF VFK++     W  +++L  R+L
Sbjct: 254 YAVFSAGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVL 313

Query: 222 FLGENSSISLLAADFPGCKPNSIYFTDDYLAGYATDPDAPRDIGVFNI 365
           F+G NSS+S  A+DF GC  + IYFTDDY      D     D+GVF +
Sbjct: 314 FVGGNSSLSFCASDFVGCSADCIYFTDDYSESNDDDACGKHDLGVFRL 361


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
 Frame = +3

Query: 66  RYIVESNGDFLQVIRTTE--------DEGP--IYYTTGFIVFKLDPDAAKWTEMKSLCGR 215
           +Y+V S  + L V R  +        D  P  IY T  F VF+LD +  +W  M +L  +
Sbjct: 257 QYLVNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDK 316

Query: 216 MLFLGENSSISLLAADFPGCKPNSIYFTDDYLAGYATDPDAPRDIGVFNI 365
            LF+GENSS+SL A DF GC  N IY+TDDYL           D+G+F +
Sbjct: 317 ALFIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKL 366


>ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinifera]
          Length = 375

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
 Frame = +3

Query: 63  KRYIVESNGDFLQVIRTTEDEGP---IYYTTGFIVFKLDPDAAKWTEMKSLCGRMLFLGE 233
           K+ +VESNG+ L V  T  D+G    +     F VFKL+     W E+++L  R+LFLGE
Sbjct: 240 KKSLVESNGELLMV-NTYFDQGIHGIMNRAVRFKVFKLNQIGHMWVEVENLGDRILFLGE 298

Query: 234 NSSISLLAADFPGCKPNSIYFTDDYLAGYATDPDAPRDIGVFNIEYG 374
            S+ S +A++F GC+ N IY+T+ +      + DA   IG+FN+E G
Sbjct: 299 KSTFSAVASEFCGCEGNCIYYTNSFFFPNDQEDDAYTGIGIFNLENG 345