BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031829
         (216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-22
emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]   109   3e-22
ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...    91   1e-16
ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containi...    89   4e-16

>ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  109 bits (272), Expect = 3e-22
 Identities = 47/71 (66%), Positives = 63/71 (88%)
 Frame = +3

Query: 3   SMRERRIEKRPGCSLVEVNSVIHEFVSGDNSHPQYEAVKELLGSILERLRLAGYSPDTSN 182
           SMRE+RI K+PGCSL+ VN +IHEFV+GDN+HPQ+E+++E L S+++ L++ GY+PD SN
Sbjct: 414 SMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISN 473

Query: 183 VLFDIEEEEKE 215
           VLFDIEEEEKE
Sbjct: 474 VLFDIEEEEKE 484


>emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  109 bits (272), Expect = 3e-22
 Identities = 47/71 (66%), Positives = 63/71 (88%)
 Frame = +3

Query: 3   SMRERRIEKRPGCSLVEVNSVIHEFVSGDNSHPQYEAVKELLGSILERLRLAGYSPDTSN 182
           SMRE+RI K+PGCSL+ VN +IHEFV+GDN+HPQ+E+++E L S+++ L++ GY+PD SN
Sbjct: 414 SMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISN 473

Query: 183 VLFDIEEEEKE 215
           VLFDIEEEEKE
Sbjct: 474 VLFDIEEEEKE 484


>ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +3

Query: 3   SMRERRIEKRPGCSLVEVNSVIHEFVSGDNSHPQYEAVKELLGSILERLRLAGYSPDTSN 182
           SMRE +I K PG SLV ++ V HEFVSGDNSHPQ+E +   LGS+++ ++L GY+P T N
Sbjct: 424 SMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKN 483

Query: 183 VLFDIEEEEKE 215
           VL DI+EEEKE
Sbjct: 484 VLHDIQEEEKE 494


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = +3

Query: 3   SMRERRIEKRPGCSLVEVNSVIHEFVSGDNSHPQYEAVKELLGSILERLRLAGYSPDTSN 182
           SM+   I K PGCS++EVN  +HEF SGD SHP Y+ ++ + G I +RL+LAGY   T++
Sbjct: 470 SMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNS 529

Query: 183 VLFDIEEEEKE 215
           VLFDIEEEEKE
Sbjct: 530 VLFDIEEEEKE 540


>ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +3

Query: 6   MRERRIEKRPGCSLVEVNSVIHEFVSGDNSHPQYEAVKELLGSILERLRLAGYSPDTSNV 185
           MRER++ K PGCS +++   IHEFV+GD+SHPQ E +   LG + + L+ AGY PDT  V
Sbjct: 497 MRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQV 556

Query: 186 LFDIEEEEKE 215
           L D++EEEKE
Sbjct: 557 LLDMDEEEKE 566