BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031826
         (760 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17585.3| unnamed protein product [Vitis vinifera]              221   1e-55
ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   221   1e-55
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...   220   3e-55
ref|XP_003611888.1| Pentatricopeptide repeat-containing protein ...   213   3e-53
ref|NP_001119513.1| pentatricopeptide repeat-containing protein ...   204   2e-50

>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  221 bits (564), Expect = 1e-55
 Identities = 115/243 (47%), Positives = 172/243 (70%)
 Frame = +1

Query: 31  LQHLRHITTSSSTNSVSLYLQRSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSL 210
           +Q  R+ T +  +  +SLYL R++LIDSIRL LRSN+P++ +P LL  P++DSFV+ N+L
Sbjct: 17  MQQTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIP-LLNDPTVDSFVVANAL 75

Query: 211 RSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEINAGKYTN 390
           +SAPSPDSALSL + I +T P+F HTQ T+  LAK+LAKS++ +EL  L+ +INAGK+ N
Sbjct: 76  QSAPSPDSALSLLE-ILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWN 134

Query: 391 IPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNIYVKNSQ 570
           + R++FMEL+ +++ AGD +S +  WN YR        + K    E+YNI++ +YV+  +
Sbjct: 135 V-RISFMELMKWHAAAGDLESVLHAWNRYR-------VSGKQVSIEAYNIVMRLYVQMGK 186

Query: 571 HLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRTVNQYLI 750
              A+ +F ++I +GA PN RTYT+V+ HL + GKL+ A ++F  LP MRI+RT+ QY I
Sbjct: 187 DSEAMQIFHKIISEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSI 246

Query: 751 LAQ 759
           L +
Sbjct: 247 LVE 249


>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  221 bits (564), Expect = 1e-55
 Identities = 115/243 (47%), Positives = 172/243 (70%)
 Frame = +1

Query: 31  LQHLRHITTSSSTNSVSLYLQRSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSL 210
           +Q  R+ T +  +  +SLYL R++LIDSIRL LRSN+P++ +P LL  P++DSFV+ N+L
Sbjct: 17  MQQTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIP-LLNDPTVDSFVVANAL 75

Query: 211 RSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEINAGKYTN 390
           +SAPSPDSALSL + I +T P+F HTQ T+  LAK+LAKS++ +EL  L+ +INAGK+ N
Sbjct: 76  QSAPSPDSALSLLE-ILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWN 134

Query: 391 IPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNIYVKNSQ 570
           + R++FMEL+ +++ AGD +S +  WN YR        + K    E+YNI++ +YV+  +
Sbjct: 135 V-RISFMELMKWHAAAGDLESVLHAWNRYR-------VSGKQVSIEAYNIVMRLYVQMGK 186

Query: 571 HLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRTVNQYLI 750
              A+ +F ++I +GA PN RTYT+V+ HL + GKL+ A ++F  LP MRI+RT+ QY I
Sbjct: 187 DSEAMQIFHKIISEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSI 246

Query: 751 LAQ 759
           L +
Sbjct: 247 LVE 249


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score =  220 bits (560), Expect = 3e-55
 Identities = 118/247 (47%), Positives = 164/247 (66%)
 Frame = +1

Query: 13  SKMHFNLQHLRHITTSSSTNSVSLYLQRSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSF 192
           +K +   Q +R        N ++ YL+R++LIDSIRL+LRSNSP +    L     LD F
Sbjct: 11  NKFNILTQQIRFFVRDPFPNKLTHYLRRAELIDSIRLALRSNSPNSITTFLNNTRILDPF 70

Query: 193 VITNSLRSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEIN 372
           VIT+++RSAPS DSAL L + I +  P+FTH Q T+H LA +LA+S K  EL  L+ EIN
Sbjct: 71  VITHTIRSAPSADSALFLIE-ILKNIPHFTHNQSTIHALATVLARSCKSFELKSLLNEIN 129

Query: 373 AGKYTNIPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNI 552
            GKY N+ RV+FM L+ +Y+  GD D+ + VW+EYR+       + K  CTESYNI++++
Sbjct: 130 VGKYCNV-RVSFMNLMQWYAAVGDLDAVLDVWDEYRH-------SDKRVCTESYNIIMSL 181

Query: 553 YVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRT 732
           + K      AV++F +MI +GA PN RTYT+++ HLV LGKL+ A E+F  LP MRIKRT
Sbjct: 182 FAKMGNDAKAVEIFYRMIDEGAIPNSRTYTVMIEHLVKLGKLDSAIEVFSVLPLMRIKRT 241

Query: 733 VNQYLIL 753
           + QY +L
Sbjct: 242 LKQYSVL 248



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 49/187 (26%), Positives = 92/187 (49%)
 Frame = +1

Query: 193 VITNSLRSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEIN 372
           ++   LR+  SP++A   F  +    P FTH   T+  +  LLA+  K+  +  LIT+I 
Sbjct: 377 LVCKVLRNFSSPETAWYFFCWVAY-QPGFTHDVYTVQRMMTLLARHGKVELVDKLITKIR 435

Query: 373 AGKYTNIPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNI 552
             +   +P  T   ++ FY I+ + D+A+KV+ + R +    G   K      Y+ LL  
Sbjct: 436 I-EGMRLPFSTIRLIIDFYGISKNADAALKVFRDDRPLC---GSITKFNLMLLYSSLLRT 491

Query: 553 YVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRT 732
             K +++  A+D+  +MI  G  P+ +TY+ +M+H    G +  A ++F  +    ++  
Sbjct: 492 LTKCNRNSDAIDVLEEMILCGISPDIQTYSGLMYHFALQGDIKTAQKLFTIVRQSGVEPD 551

Query: 733 VNQYLIL 753
              + +L
Sbjct: 552 AYMFKVL 558


>ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513223|gb|AES94846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 659

 Score =  213 bits (543), Expect = 3e-53
 Identities = 112/229 (48%), Positives = 157/229 (68%), Gaps = 1/229 (0%)
 Frame = +1

Query: 76  VSLYLQRSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQT 255
           ++ YL R+KLIDSIRLSLRSN+P + L  L+ H   DSFV+T++LRSAP  DSALSL  T
Sbjct: 35  ITHYLNRAKLIDSIRLSLRSNNPNSTLSTLINHRLFDSFVLTHALRSAPCADSALSLIHT 94

Query: 256 ITQTHP-NFTHTQPTLHTLAKLLAKSRKISELHILITEINAGKYTNIPRVTFMELLHFYS 432
           I  T   NF+HTQ TLH LA +LAKS K+ EL  LI +I + ++ N+ +++FM L+ +Y+
Sbjct: 95  IENTKSSNFSHTQNTLHALATVLAKSGKLVELKSLIDDIESKRFGNV-KISFMNLMQWYA 153

Query: 433 IAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNIYVKNSQHLYAVDLFCQMIHD 612
            A D DS ++VW++YR          +  CTESYNI++ +YV+  +   AV +FC+M+ D
Sbjct: 154 AAKDIDSVVRVWDQYR-------VESRIVCTESYNIVMTLYVEMGKDSEAVGIFCKMVDD 206

Query: 613 GAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRTVNQYLILAQ 759
           G+ PN R+Y+I++ HLV   K  EA E+F  LP MRIKRT+ QY +L +
Sbjct: 207 GSVPNCRSYSIIIEHLVKCRKFLEAIEVFNLLPLMRIKRTLKQYSVLIE 255



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 47/189 (24%), Positives = 90/189 (47%)
 Frame = +1

Query: 193 VITNSLRSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEIN 372
           ++   LRS  SPD+A + F  +    P FTH   T+  +  LLA+  +   +  LI +I 
Sbjct: 384 LVCKILRSFRSPDTAWNFFCWVAD-RPGFTHNIYTVQRIMTLLARHGRTELVDRLILKIR 442

Query: 373 AGKYTNIPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNI 552
             +   +P  T   ++ FY I+ + D+A+KV+N+ + +    G   K      Y+ LL  
Sbjct: 443 I-EGMRLPFSTIRLIIDFYGISKNADAALKVFNDDQILC---GSISKVNLMLLYSSLLRT 498

Query: 553 YVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRT 732
             K  ++   +D+  +MI +G  P+ +T++ +M +   LG +    ++F  +     +  
Sbjct: 499 LTKCGRNSNTLDMLDEMILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFSMVRQSGFEPD 558

Query: 733 VNQYLILAQ 759
              Y +L +
Sbjct: 559 AYLYKVLIE 567


>ref|NP_001119513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635653|sp|B3H4P1.1|PP450_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g66631 gi|332010859|gb|AED98242.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  204 bits (519), Expect = 2e-50
 Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 1/244 (0%)
 Frame = +1

Query: 31  LQHLRHITTSSSTNSVSLYLQRSKLIDSIRLSLRSNSPQTH-LPKLLTHPSLDSFVITNS 207
           +  +R  +     N V  YL R+ LIDSIRLSLRS +     L  LL H  LDSFV+ N+
Sbjct: 18  IHQIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNA 77

Query: 208 LRSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITEINAGKYT 387
           LRS+PS  SA S+F+T++   P F+    TLH  A +LAK ++ SEL+ LI  +NA K+ 
Sbjct: 78  LRSSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFR 137

Query: 388 NIPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILLNIYVKNS 567
           N+   +FM LL+ Y+ AGDFDS +K W+EYR     +G+ KK  CTESYNI++ +Y+   
Sbjct: 138 NV-HFSFMNLLNLYATAGDFDSVLKTWDEYRC----SGEEKKG-CTESYNIVMQVYMTLG 191

Query: 568 QHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIKRTVNQYL 747
           +   AV  F Q+I++G  PN RT+TI++ HLV LG L+ A +IFETLP MRI RT+  Y 
Sbjct: 192 KDSEAVQTFDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYS 251

Query: 748 ILAQ 759
           +L +
Sbjct: 252 VLVE 255



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 42/191 (21%), Positives = 90/191 (47%)
 Frame = +1

Query: 187 SFVITNSLRSAPSPDSALSLFQTITQTHPNFTHTQPTLHTLAKLLAKSRKISELHILITE 366
           + ++   LR+  +P++A S F  +    P FTH   T+  +  +LA++ ++  +  LI++
Sbjct: 378 NLLVCKMLRNFRAPETAWSFFCWVA-IQPGFTHDAYTIERMMAMLARNGQVELVDKLISK 436

Query: 367 INAGKYTNIPRVTFMELLHFYSIAGDFDSAIKVWNEYRNVVMNNGKTKKHPCTESYNILL 546
           +   +   +P  T   ++  Y I+   ++AIKV+NE R +    G          Y+ LL
Sbjct: 437 VRI-EGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLC---GSISDFNLMLLYSSLL 492

Query: 547 NIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFETLPSMRIK 726
               K  ++  A++    M+  G  P+ +T++ +M+H    G++     +F  +  + ++
Sbjct: 493 RTLTKCKRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLE 552

Query: 727 RTVNQYLILAQ 759
                  +L Q
Sbjct: 553 PDPYMLKLLVQ 563