BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031825
         (522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    88   7e-16
emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|72688...    83   2e-14
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              77   1e-12
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...    76   3e-12
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    74   1e-11

>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 88.2 bits (217), Expect = 7e-16
 Identities = 50/128 (39%), Positives = 70/128 (54%)
 Frame = -1

Query: 384 TSEEEPLRFTDDDDLLGVYHPPYDAVIISVSIGASRVQRVMIDTGATSSVIFSGCYSQMQ 205
           T E  PL FT +D L GV  P  D ++I + IG S V R++IDTG++ +V+F     +M+
Sbjct: 324 TKEMTPLTFTSED-LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMK 382

Query: 204 LREGMIIAEDNPIIGFDGTTSSAVGRITLPIKLMNKEVELDFLLMDCRSHYNAILGRDWI 25
           + +  I     P+ GFDG T    G I LPI L        F+++D  + YN ILG  WI
Sbjct: 383 VHDRHIKPSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWI 442

Query: 24  HSMGVVVS 1
           H M  + S
Sbjct: 443 HDMQAIPS 450


>emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|7268845|emb|CAB79049.1|
           putative protein [Arabidopsis thaliana]
          Length = 853

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/131 (32%), Positives = 76/131 (58%)
 Frame = -1

Query: 393 QTETSEEEPLRFTDDDDLLGVYHPPYDAVIISVSIGASRVQRVMIDTGATSSVIFSGCYS 214
           + E   +EP+ FT +D   G+ HP  DA++I + +    V+R++IDTG++ +++F     
Sbjct: 454 EAEPLSQEPIIFTSED-ASGIQHPHNDALVIKLVMEDFDVERILIDTGSSVNLMFLKTLF 512

Query: 213 QMQLREGMIIAEDNPIIGFDGTTSSAVGRITLPIKLMNKEVELDFLLMDCRSHYNAILGR 34
           +M + E  I+ +  P+ G+DG    ++G I L +++     +  F+++D    YNAILG 
Sbjct: 513 KMGISESKIMPKIRPMTGYDGEAKMSIGEIKLQVQVGGITQKTKFVVIDSEPIYNAILGS 572

Query: 33  DWIHSMGVVVS 1
            WI+SM  + S
Sbjct: 573 PWIYSMKAIPS 583


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 44/127 (34%), Positives = 68/127 (53%)
 Frame = -1

Query: 381 SEEEPLRFTDDDDLLGVYHPPYDAVIISVSIGASRVQRVMIDTGATSSVIFSGCYSQMQL 202
           ++  P+ FTD D L G+  P  D +++ + I  SRV RV+IDTG++  +IF    + M +
Sbjct: 595 NQSAPISFTDVD-LEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNI 653

Query: 201 REGMIIAEDNPIIGFDGTTSSAVGRITLPIKLMNKEVELDFLLMDCRSHYNAILGRDWIH 22
            +  I     P+ GFDG     +G I LPI +      + F+++   + YN ILG  WIH
Sbjct: 654 TDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIH 713

Query: 21  SMGVVVS 1
            M  + S
Sbjct: 714 QMQAIPS 720


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
           [Sorghum bicolor]
          Length = 1877

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 38/120 (31%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
 Frame = -1

Query: 369 PLRFTDDDDLLGVYHPPYDAVIISVSIGASRVQRVMIDTGATSSVIFSGCYSQMQLREGM 190
           P+ FT++D  L  Y P  DA++I+ ++    V R+++D+G+++ +IF+G + QM+L    
Sbjct: 619 PITFTEEDLRLESY-PHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQ 677

Query: 189 IIAEDNPIIGFDGTTSSAVGRITLPIKLMNKE----VELDFLLMDCRSHYNAILGRDWIH 22
           +   ++P+IGF G    A+G++ LP+     E      + F ++D    YNAI GR +++
Sbjct: 678 LQPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLN 737


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
 Frame = -1

Query: 477  QSKNQKRLKVSYVGEFNRTYQQNFVKGIQTETSEEEPLRFTDDDDLLGVYHPPYDAVIIS 298
            +SK Q++  V  V     +YQ N     +T  S          +D  G+  P  D +++S
Sbjct: 706  ESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVIS-------FGPEDAEGILFPHQDPLVVS 758

Query: 297  VSIGASRVQRVMIDTGATSSVIFSGCYSQMQLREGMIIAEDNPIIGFDGTTSSAVGRITL 118
            V I    VQRV+ID G+++ V+F   + +MQ+ E  +     P+ GF G    A+G+I+L
Sbjct: 759  VEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISL 818

Query: 117  PIKLMN----KEVELDFLLMDCRSHYNAILGRDWIHSMGVVV 4
             +        ++ E+ F ++D    YNAILGR  I+    ++
Sbjct: 819  QVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAII 860