BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031824
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...    91   7e-17
ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pen...    84   2e-14
emb|CBI27406.3| unnamed protein product [Vitis vinifera]               78   7e-13
gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical p...    77   1e-12

>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 42/74 (56%), Positives = 58/74 (78%), Gaps = 3/74 (4%)
 Frame = -1

Query: 269 CKEGDVEKAMQIYKKMISNRIVPNSYAHGAILLGRCKKGNVEEARKHFDSLTTVS---NV 99
           CK+G+V++A+ +Y+KM SNRI+PNS  HGAIL+G C+KG + +AR +FD L T +   ++
Sbjct: 467 CKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDI 526

Query: 98  ILYNIMIDGYAKIG 57
           ILYNIMIDGY K G
Sbjct: 527 ILYNIMIDGYIKRG 540


>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/89 (51%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
 Frame = -1

Query: 269 CKEGDVEKAMQIYKKMISNRIVPNSYAHGAILLGRCKKGNVEEARKHFDSLTTVS---NV 99
           CK+G V++A+Q+YK+M  NRI PNS+AH  IL G C+KG + +AR +FDSL   +   +V
Sbjct: 372 CKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDV 431

Query: 98  ILYNIMIDGYAKIGQVGKVDEAKELLQTL 12
            LYNIMIDGY K+G    V+EA  L + L
Sbjct: 432 TLYNIMIDGYVKLGD---VEEAVRLYKRL 457


>ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
 Frame = -1

Query: 269 CKEGDVEKAMQIYKKMISNRIVPNSYAHGAILLGRCKKGNVEEARKHFDSLT---TVSNV 99
           CK G VE+A+++Y++M S RI PNS+   AI+ G  +KG + EA+ +FDS+T       +
Sbjct: 456 CKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEI 515

Query: 98  ILYNIMIDGYAKIGQVGK-VDEAKELLQ 18
           ILYNIMIDGYAK+G +G+ V   K++++
Sbjct: 516 ILYNIMIDGYAKLGNIGEAVRSYKQIIE 543


>emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/85 (45%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
 Frame = -1

Query: 260 GDVEKAMQIYKKMISNRIVPNSYAHGAILLGRCKKGNVEEARKHFDSLT---TVSNVILY 90
           G VE+A+++Y++M S RI PNS+   AI+ G  +KG + EA+ +FDS+T       +ILY
Sbjct: 451 GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 510

Query: 89  NIMIDGYAKIGQVGK-VDEAKELLQ 18
           NIMIDGYAK+G +G+ V   K++++
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIE 535


>gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
 Frame = -1

Query: 269 CKEGDVEKAMQIYKKMISNRIVPNSYAHGAILLGRCKKGNVEEARKHFDSLTT---VSNV 99
           CK G  + A+ +Y +M   RI+PNS  HGA+LLG C+KG + EAR   DSL +     ++
Sbjct: 422 CKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDI 481

Query: 98  ILYNIMIDGYAKIGQVGKVDEAKELLQTLM 9
           +LYNI+IDGYAK    G ++EA EL + ++
Sbjct: 482 VLYNIVIDGYAK---SGCIEEALELFKVVI 508