BLASTX nr result
ID: Coptis24_contig00031800
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00031800
(661 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ... 127 1e-28
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar... 118 3e-27
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi... 118 5e-27
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [... 118 5e-27
dbj|BAD44345.1| retrotransposon like protein [Arabidopsis thaliana] 106 4e-25
>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2301
Score = 127 bits (320), Expect(2) = 1e-28
Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Frame = -1
Query: 439 GQRSSSRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQ 260
G+ +R + + G F++RGRGF Q + +S ++ E P CQ
Sbjct: 236 GRPFFTRNRGRNRGGRSFFSTRGRGFPQH-----LSSSSSSRSSVSADSEARPV----CQ 286
Query: 259 VCKKRGYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTES---EWLPDSGATTHITDDPG 89
+C K G+ A++CW+RFDNSYQ D++ +LAA+ ++ +S EW PD+GA+ HIT+ P
Sbjct: 287 ICGKSGHEAMRCWHRFDNSYQLDEMHNALAAMRVSDMIDSRGGEWFPDTGASAHITNTPH 346
Query: 88 ILSNIKPYMGSDSIMVGNGEQLPITHTG 5
L N +PYMGSDS+MVGNGE LPITHTG
Sbjct: 347 HLQNAQPYMGSDSVMVGNGEYLPITHTG 374
Score = 24.6 bits (52), Expect(2) = 1e-28
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = -2
Query: 579 KVFWILNGLGRRYESFST-------VCLIPSYIDLIPLLHSHE 472
K+F L GLG+ YE T PS+ D++P L + E
Sbjct: 171 KIFAALLGLGKEYEPIKTSIEGSMDTQYHPSFEDVVPRLVAFE 213
>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
Length = 1522
Score = 118 bits (296), Expect(2) = 3e-27
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Frame = -1
Query: 415 QNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKRGYN 236
++ G SF++RGRGF Q +P +A + + CQ+C K G++
Sbjct: 244 RSNSGSGKSSFSTRGRGFHQQI--------------SPTSGSQAGNSGLVCQICGKAGHH 289
Query: 235 ALKCWYRFDNSYQDDQVPQSLAALHLNSPTES---EWLPDSGATTHITDDPGILSNIKPY 65
ALKCW+RFDNSYQ + +P +LA + + T+ EW+PDS A+ H+T++ +L +PY
Sbjct: 290 ALKCWHRFDNSYQHEDLPMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPY 349
Query: 64 MGSDSIMVGNGEQLPITHTG 5
GSDSIMV +G LPITHTG
Sbjct: 350 HGSDSIMVADGNFLPITHTG 369
Score = 29.3 bits (64), Expect(2) = 3e-27
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 579 KVFWILNGLGRRYESFSTVCLIPSYIDLIPLLHSHELSMQI 457
K+F LNGLGR YE T I + +D P L E++ ++
Sbjct: 165 KIFSALNGLGREYEPIKTT--IENSVDSNPSLSLDEVASKL 203
>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1402
Score = 118 bits (295), Expect(2) = 5e-27
Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Frame = -1
Query: 424 SRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKR 245
+R + K SF++RGRGF Q + NS + ++ V CQ+C K
Sbjct: 244 NRGKGKSNRGRNSFSTRGRGFHQQ-----ISSTNSSSGS------QSGGTSVVCQICGKM 292
Query: 244 GYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDDPGILSNI 74
G+ ALKCW+RF+NSYQ +++P++LAA+ + T+ +EWLPDS AT H+T+ P L
Sbjct: 293 GHPALKCWHRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSPRSLQQS 352
Query: 73 KPYMGSDSIMVGNGEQLPITHTG 5
+PY GSD++MV +G LPITHTG
Sbjct: 353 QPYHGSDAVMVADGNFLPITHTG 375
Score = 28.9 bits (63), Expect(2) = 5e-27
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Frame = -2
Query: 579 KVFWILNGLGRRYESFSTVCLI-------PSYIDLIPLLHSHELSMQ 460
K+F LNGLGR YE T PS D+IP L ++ +Q
Sbjct: 166 KIFAALNGLGREYEPIKTTIENSMDALPGPSLEDVIPKLTGYDDRLQ 212
>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|17104755|gb|AAL34266.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|51971701|dbj|BAD44515.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|51971723|dbj|BAD44526.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|110741320|dbj|BAF02210.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 405
Score = 118 bits (295), Expect(2) = 5e-27
Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Frame = -1
Query: 424 SRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKR 245
+R + K SF++RGRGF Q + NS + ++ V CQ+C K
Sbjct: 254 NRGKGKSNRGRNSFSTRGRGFHQQ-----ISSTNSSSGS------QSGGTSVVCQICGKM 302
Query: 244 GYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDDPGILSNI 74
G+ ALKCW+RF+NSYQ +++P++LAA+ + T+ +EWLPDS AT H+T+ P L
Sbjct: 303 GHPALKCWHRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSPRSLQQS 362
Query: 73 KPYMGSDSIMVGNGEQLPITHTG 5
+PY GSD++MV +G LPITHTG
Sbjct: 363 QPYHGSDAVMVADGNFLPITHTG 385
Score = 28.9 bits (63), Expect(2) = 5e-27
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Frame = -2
Query: 579 KVFWILNGLGRRYESFSTVCLI-------PSYIDLIPLLHSHELSMQ 460
K+F LNGLGR YE T PS D+IP L ++ +Q
Sbjct: 176 KIFAALNGLGREYEPIKTTIENSMDALPGPSLEDVIPKLTGYDDRLQ 222
>dbj|BAD44345.1| retrotransposon like protein [Arabidopsis thaliana]
Length = 383
Score = 106 bits (265), Expect(2) = 4e-25
Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Frame = -1
Query: 451 LAFVGQRS-SSR-YQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPT 278
LAF +S SSR N RGG +F RGRG S R + Q S NN + PT
Sbjct: 224 LAFYTDKSYSSRGNNNSRGGRYGNF--RGRGSYSSRGRGFHQQFGSGSNNGSGNGSK-PT 280
Query: 277 NDVYCQVCKKRGYNALKCWYRFDNSYQDDQVPQSLAALHL---NSPTESEWLPDSGATTH 107
CQ+C+K G++A KC+ RF+ +Y + +P + AA+ + N + EWLPDS AT H
Sbjct: 281 ----CQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAATAH 336
Query: 106 ITDDPGILSNIKPYMGSDSIMVGNGEQLPITHTGR 2
IT+ L N + Y G DS++VGNG+ LPITH G+
Sbjct: 337 ITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGQ 371
Score = 33.9 bits (76), Expect(2) = 4e-25
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -2
Query: 585 QNKVFWILNGLGRRYESFSTVCLIPSYIDLIP 490
Q K+F +LNGLG+ YES +TV I +D+ P
Sbjct: 164 QEKIFGVLNGLGKEYESIATV--IEHSLDVYP 193