BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031755
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533114.1| pentatricopeptide repeat-containing protein,...    70   2e-10
ref|XP_002525630.1| pentatricopeptide repeat-containing protein,...    69   4e-10
ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|NP_180537.1| pentatricopeptide repeat-containing protein [Ar...    67   2e-09

>ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527077|gb|EEF29259.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 36/97 (37%), Positives = 55/97 (56%)
 Frame = +2

Query: 41  RPTTHDDISSALQSCTSLKQAKQIHVCILRNNPQDAEHLYAKLLLVSTSLPSMSATALDY 220
           R T     SS  Q+CT+L+  KQIH  ++      + +   +L+  S  +       +DY
Sbjct: 9   RSTKRQQPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIV---IPGTIDY 65

Query: 221 ALLVFEQLEEPNIFMWNTMIRGYAGSESPKRTISFYT 331
           A  +F+Q+ EP+IFMWNTM+RG + S SP + +S YT
Sbjct: 66  AHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYT 102


>ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535066|gb|EEF36748.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 765

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
 Frame = +2

Query: 29  SSPLRP-------------TTHDDISSALQSCTSLKQAKQIHVCILRN----NPQDAEHL 157
           S PLRP             T+H    S +  CT+LK  K++H  ILR+    +P +A  L
Sbjct: 10  SIPLRPNHSILTVPNGRPVTSHSQTLSLIDQCTNLKHLKELHATILRSGLFFHPYNASKL 69

Query: 158 YAKLLLVSTSLPSMSATALDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRTISFY 328
           ++   L S S       +LDYA  VFE++ +PN++ WNT+IR +A S  P  ++  +
Sbjct: 70  FSVAALSSFS-------SLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIF 119


>ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 37/105 (35%), Positives = 60/105 (57%)
 Frame = +2

Query: 14  VALSFSSPLRPTTHDDISSALQSCTSLKQAKQIHVCILRNNPQDAEHLYAKLLLVSTSLP 193
           +A++ S+ L P+  +     L SC +L+  KQIH  ILR+   ++  L  KL+L   +LP
Sbjct: 1   MAMAMSTRLIPSPSE--KGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLP 58

Query: 194 SMSATALDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRTISFY 328
           S S +ALDYAL +F  +  P     N ++R ++   +P+ T+S Y
Sbjct: 59  SPSPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLY 103


>ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/89 (38%), Positives = 51/89 (57%)
 Frame = +2

Query: 65  SSALQSCTSLKQAKQIHVCILRNNPQDAEHLYAKLLLVSTSLPSMSATALDYALLVFEQL 244
           SS  Q CT+ +  KQ+H  ++ N       +  +L+ VS  + S +   +DYA  +F Q+
Sbjct: 17  SSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGT---MDYAHQLFAQI 73

Query: 245 EEPNIFMWNTMIRGYAGSESPKRTISFYT 331
            +P+IFMWNTMIRG A +  P   +S YT
Sbjct: 74  SQPDIFMWNTMIRGSAQTLKPATAVSLYT 102


>ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75100656|sp|O82380.1|PP175_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
           gi|3582328|gb|AAC35225.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 738

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
 Frame = +2

Query: 23  SFSSPLRPTTHDDIS---SALQSCTSLKQAKQIHVCILR----NNPQDAEHLYAKLLLVS 181
           +FS+P +PTT+++ S   S ++ C SL+Q KQ H  ++R    ++P  A  L+A   L S
Sbjct: 17  NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76

Query: 182 TSLPSMSATALDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRTI 319
            +       +L+YA  VF+++ +PN F WNT+IR YA    P  +I
Sbjct: 77  FA-------SLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSI 115