BLASTX nr result
ID: Coptis24_contig00031670
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00031670 (579 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003596095.1| F-box protein [Medicago truncatula] gi|35548... 54 2e-11 gb|AAT38720.1| Putative F-Box protein, identical [Solanum demissum] 47 4e-11 gb|ABI34316.1| S haplotype-specific F-box protein, putative [Sol... 47 6e-11 ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ... 51 9e-11 ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus ... 50 1e-10 >ref|XP_003596095.1| F-box protein [Medicago truncatula] gi|355485143|gb|AES66346.1| F-box protein [Medicago truncatula] Length = 361 Score = 53.5 bits (127), Expect(2) = 2e-11 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 7/103 (6%) Frame = -3 Query: 352 CSITGMWNIEGELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSED--RVCLLN 179 C ++ + GE F V++ P N+ + +F ++ NG +C+ +E+ R+ L N Sbjct: 73 CQWRKLYLLSGERFENKVQLNWPDPFNR--SYSYTYIFGSAINGTLCINNENHSRIVLWN 130 Query: 178 PSTRECKIVNFGKNRCWHYGLT-----RGFGYDPITDNYKLVE 65 P+T E IV K R W+YG GFGYD + D+YK+++ Sbjct: 131 PATDESNIVPANKVR-WYYGFVPNYTIHGFGYDHVRDDYKIIQ 172 Score = 40.8 bits (94), Expect(2) = 2e-11 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = -2 Query: 560 LPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISS 456 +P++V+ IFS++P KSV RF C+SKSW +S Sbjct: 12 VPEDVVFSIFSKLPLKSVNRFTCVSKSWTTLFENS 46 >gb|AAT38720.1| Putative F-Box protein, identical [Solanum demissum] Length = 372 Score = 47.4 bits (111), Expect(2) = 4e-11 Identities = 18/39 (46%), Positives = 29/39 (74%) Frame = -2 Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSK 453 + LP E+I+EI +VPPKS+++F C+SK+W + S+K Sbjct: 6 ISVLPHEIIIEILLKVPPKSLLKFMCVSKTWLELISSAK 44 Score = 45.4 bits (106), Expect(2) = 4e-11 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Frame = -3 Query: 352 CSITGMWNIEG--ELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLL 182 C + M N E ELF+ + NP + V S NGL+CL S+ + L Sbjct: 76 CCLPSMLNKERSTELFDIGSPMENPTI---------YTWIVGSVNGLICLYSKIEETVLW 126 Query: 181 NPSTRECK-IVNFG---KNRCWHYGLTRGFGYDPITDNYKLVEI 62 NP+ ++ K + G +N C +Y L GFGYD D+YK+V I Sbjct: 127 NPAVKKSKKLPTLGAKLRNGCSYY-LKYGFGYDETRDDYKVVVI 169 >gb|ABI34316.1| S haplotype-specific F-box protein, putative [Solanum demissum] Length = 190 Score = 47.0 bits (110), Expect(2) = 6e-11 Identities = 19/39 (48%), Positives = 28/39 (71%) Frame = -2 Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSK 453 + LP E+I EI +PPKS+++FRC+SKSW + S+K Sbjct: 6 ISVLPHEIIKEILLNLPPKSLLKFRCVSKSWLELISSAK 44 Score = 45.4 bits (106), Expect(2) = 6e-11 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Frame = -3 Query: 352 CSITGMWNIEG--ELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLL 182 C + M N E ELF+ + NP + V S NGL+CL S+ + L Sbjct: 76 CCLRSMLNKEQSTELFDIGSPMENPSI---------YTWIVGSVNGLICLYSKIEETVLW 126 Query: 181 NPSTRECK-IVNFG---KNRCWHYGLTRGFGYDPITDNYKLVEI 62 NP+ ++ K + G +N C +Y L GFGYD D+YK+V I Sbjct: 127 NPAVKKSKKLPTLGAKLRNGCSYY-LKYGFGYDETRDDYKVVVI 169 >ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 414 Score = 51.2 bits (121), Expect(2) = 9e-11 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 13/123 (10%) Frame = -3 Query: 334 WNIEGELFNKSVEVRNPFVSNQYPT-AGDLALFVASCNGLVCL-LSEDRVCLLNPSTREC 161 +N+ + N +++ NP PT A V SCNGL+C + R+ L+NPSTR+ Sbjct: 69 YNVNLDSLNSIIKLENPIKG---PTDASHNIKIVGSCNGLLCFGNASGRITLMNPSTRKH 125 Query: 160 KIVNF--------GKN--RCWHYGLTRGFGYDPITDNYKLVEISIDRNFH-DIFNTETRV 14 K++ F GK+ W + GFG D + D+YK++ + +F F T+T V Sbjct: 126 KVLPFLRMDASVKGKSVWGAWAF----GFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMV 181 Query: 13 SSL 5 SL Sbjct: 182 YSL 184 Score = 40.4 bits (93), Expect(2) = 9e-11 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Frame = -2 Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWC------NFLISSKRTSVTRLPKTSLIF 411 L LP E++ EI +R+P ++RFR +SKSWC NF+ + + S +LIF Sbjct: 2 LEKLPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIF 60 >ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542641|gb|EEF44178.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 406 Score = 50.1 bits (118), Expect(2) = 1e-10 Identities = 24/48 (50%), Positives = 36/48 (75%) Frame = -2 Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSKRTSVTRLPK 426 + TLP+++IVEI SRVP K ++RF+C+SKSW N +IS R + +L + Sbjct: 50 ISTLPEDLIVEILSRVPVKPLLRFKCVSKSW-NSIISDPRFAKLQLKR 96 Score = 41.2 bits (95), Expect(2) = 1e-10 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Frame = -3 Query: 325 EGELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLLNPSTRECKIVN 149 + +L N V P + PT + SC+GLVCLL + + L NP+TR+ K + Sbjct: 125 DDDLSNTITNVSFPAIVKGPPTF--YVRILGSCDGLVCLLDDYGTMFLWNPTTRQYKELP 182 Query: 148 FGKNRCWHYGLTRGFGYDPITDNYKLVEISIDRNFHDIFNTETRV 14 K + L G GY+ TD+Y +V S F D N ET V Sbjct: 183 KPKGAVYRMFL-HGIGYNFSTDDYGVVFAS---RFTDDGNEETTV 223