BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031670
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003596095.1| F-box protein [Medicago truncatula] gi|35548...    54   2e-11
gb|AAT38720.1| Putative F-Box protein, identical [Solanum demissum]    47   4e-11
gb|ABI34316.1| S haplotype-specific F-box protein, putative [Sol...    47   6e-11
ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ...    51   9e-11
ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus ...    50   1e-10

>ref|XP_003596095.1| F-box protein [Medicago truncatula] gi|355485143|gb|AES66346.1|
           F-box protein [Medicago truncatula]
          Length = 361

 Score = 53.5 bits (127), Expect(2) = 2e-11
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
 Frame = -3

Query: 352 CSITGMWNIEGELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSED--RVCLLN 179
           C    ++ + GE F   V++  P   N+  +     +F ++ NG +C+ +E+  R+ L N
Sbjct: 73  CQWRKLYLLSGERFENKVQLNWPDPFNR--SYSYTYIFGSAINGTLCINNENHSRIVLWN 130

Query: 178 PSTRECKIVNFGKNRCWHYGLT-----RGFGYDPITDNYKLVE 65
           P+T E  IV   K R W+YG        GFGYD + D+YK+++
Sbjct: 131 PATDESNIVPANKVR-WYYGFVPNYTIHGFGYDHVRDDYKIIQ 172



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = -2

Query: 560 LPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISS 456
           +P++V+  IFS++P KSV RF C+SKSW     +S
Sbjct: 12  VPEDVVFSIFSKLPLKSVNRFTCVSKSWTTLFENS 46


>gb|AAT38720.1| Putative F-Box protein, identical [Solanum demissum]
          Length = 372

 Score = 47.4 bits (111), Expect(2) = 4e-11
 Identities = 18/39 (46%), Positives = 29/39 (74%)
 Frame = -2

Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSK 453
           +  LP E+I+EI  +VPPKS+++F C+SK+W   + S+K
Sbjct: 6   ISVLPHEIIIEILLKVPPKSLLKFMCVSKTWLELISSAK 44



 Score = 45.4 bits (106), Expect(2) = 4e-11
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
 Frame = -3

Query: 352 CSITGMWNIEG--ELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLL 182
           C +  M N E   ELF+    + NP +             V S NGL+CL S+ +   L 
Sbjct: 76  CCLPSMLNKERSTELFDIGSPMENPTI---------YTWIVGSVNGLICLYSKIEETVLW 126

Query: 181 NPSTRECK-IVNFG---KNRCWHYGLTRGFGYDPITDNYKLVEI 62
           NP+ ++ K +   G   +N C +Y L  GFGYD   D+YK+V I
Sbjct: 127 NPAVKKSKKLPTLGAKLRNGCSYY-LKYGFGYDETRDDYKVVVI 169


>gb|ABI34316.1| S haplotype-specific F-box protein, putative [Solanum demissum]
          Length = 190

 Score = 47.0 bits (110), Expect(2) = 6e-11
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = -2

Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSK 453
           +  LP E+I EI   +PPKS+++FRC+SKSW   + S+K
Sbjct: 6   ISVLPHEIIKEILLNLPPKSLLKFRCVSKSWLELISSAK 44



 Score = 45.4 bits (106), Expect(2) = 6e-11
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
 Frame = -3

Query: 352 CSITGMWNIEG--ELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLL 182
           C +  M N E   ELF+    + NP +             V S NGL+CL S+ +   L 
Sbjct: 76  CCLRSMLNKEQSTELFDIGSPMENPSI---------YTWIVGSVNGLICLYSKIEETVLW 126

Query: 181 NPSTRECK-IVNFG---KNRCWHYGLTRGFGYDPITDNYKLVEI 62
           NP+ ++ K +   G   +N C +Y L  GFGYD   D+YK+V I
Sbjct: 127 NPAVKKSKKLPTLGAKLRNGCSYY-LKYGFGYDETRDDYKVVVI 169


>ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 414

 Score = 51.2 bits (121), Expect(2) = 9e-11
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
 Frame = -3

Query: 334 WNIEGELFNKSVEVRNPFVSNQYPT-AGDLALFVASCNGLVCL-LSEDRVCLLNPSTREC 161
           +N+  +  N  +++ NP      PT A      V SCNGL+C   +  R+ L+NPSTR+ 
Sbjct: 69  YNVNLDSLNSIIKLENPIKG---PTDASHNIKIVGSCNGLLCFGNASGRITLMNPSTRKH 125

Query: 160 KIVNF--------GKN--RCWHYGLTRGFGYDPITDNYKLVEISIDRNFH-DIFNTETRV 14
           K++ F        GK+    W +    GFG D + D+YK++ +    +F    F T+T V
Sbjct: 126 KVLPFLRMDASVKGKSVWGAWAF----GFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMV 181

Query: 13  SSL 5
            SL
Sbjct: 182 YSL 184



 Score = 40.4 bits (93), Expect(2) = 9e-11
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = -2

Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWC------NFLISSKRTSVTRLPKTSLIF 411
           L  LP E++ EI +R+P   ++RFR +SKSWC      NF+ +  + S       +LIF
Sbjct: 2   LEKLPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIF 60


>ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223542641|gb|EEF44178.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 406

 Score = 50.1 bits (118), Expect(2) = 1e-10
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = -2

Query: 569 LPTLPDEVIVEIFSRVPPKSVVRFRCLSKSWCNFLISSKRTSVTRLPK 426
           + TLP+++IVEI SRVP K ++RF+C+SKSW N +IS  R +  +L +
Sbjct: 50  ISTLPEDLIVEILSRVPVKPLLRFKCVSKSW-NSIISDPRFAKLQLKR 96



 Score = 41.2 bits (95), Expect(2) = 1e-10
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = -3

Query: 325 EGELFNKSVEVRNPFVSNQYPTAGDLALFVASCNGLVCLLSE-DRVCLLNPSTRECKIVN 149
           + +L N    V  P +    PT       + SC+GLVCLL +   + L NP+TR+ K + 
Sbjct: 125 DDDLSNTITNVSFPAIVKGPPTF--YVRILGSCDGLVCLLDDYGTMFLWNPTTRQYKELP 182

Query: 148 FGKNRCWHYGLTRGFGYDPITDNYKLVEISIDRNFHDIFNTETRV 14
             K   +   L  G GY+  TD+Y +V  S    F D  N ET V
Sbjct: 183 KPKGAVYRMFL-HGIGYNFSTDDYGVVFAS---RFTDDGNEETTV 223